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Goal would be to eventually generate a fsspec-reference-maker JSON file to allow for the consumption of OME-TIFFs as Zarr. I assume the information is available during the first pass through tile writ…
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[OME-TIFF](https://www.openmicroscopy.org/site/support/ome-model/ome-tiff/index.html) is a TIFF format that embeds some microscopy-specific metadata as an XML comment embedded in the TIFF header. Sam…
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I known different scale tiles , how can I use tifffile build the Whole slide images tiff file,like below
 to control microscopes. However, currently it's MD…
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In [`d630f57`](https://github.com/BioImage-Archive/upptime/commit/d630f57ea1b9348a5f1a1646237cb1e19d1a25dc
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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* [x] pyramidal ome-tiff (the same file as the czi just exported as ome tiff)
* [x] pyramidal czi
* [ ] RGB pyramidal ome-tiff (the same file as the czi just exported as ome tiff)
* [ ] RGB pyramid…
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I have tried different types of pictures including tif and npdi and whenever I import pictures, the programe exits immediately.
Does it must run with Nivida GPU,
Environment: Windows 11 64bit w…
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In [`35224ef`](https://github.com/BioImage-Archive/upptime/commit/35224efbc6647f1f58faa04d8467d48589582e3f
), S-BIAD531-TFER-HTTP (https://ftp.ebi.ac.uk/biostudies/fire/S-BIAD/531/S-BIAD531/Files/Zebr…
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I using next code to generate tiff file, the tiles total size is 90M, width = 69632, height = 32768, finally tiff file size is 1.3G,
1. openSlide open it find 11 level, it correct? can I reduce the …