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@constantinpape @martinschorb @jhennies,
Do you know whether there are still projects that use BDV XML/N5 on S3 ?
If not, I would consider deprecating our support for this (unless this is suppor…
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## Use Case
For processing OME-Zarr image data it will be very useful to specify with resolution level to work on.
## Solution
Currently the resolution level appears to be [hard-coded here](h…
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In [`75e557d`](https://github.com/IDR/upptime/commit/75e557df80e00803326e2941af37f3956f7ba099
), IDR OME-NGFF sample plate (https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0001A/2551.zarr/.zattrs) wa…
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Hi,
Sorry for the naive question. I'm not very familiar with the Fiji ecosystem.
Does an ome-zarr loaded with Mobie work with [Mastodon](https://github.com/mastodon-sc/mastodon)?
If yes, how c…
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At the recent [Next generation bioimage analysis workflows hackathon](https://www.ema.uzh.ch/en/register/biovisioncenter-hackathon.html) in Zürich, a few other OME-Zarr converters were worked on. Afte…
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I've tried reading in MCMicro example data provided [here](https://mcmicro.org/datasets/#exemplar-data-for-testing-mcmicro) and unfortunately I run into the following error:
full traceback
```…
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Should be super easy. The harder part is to add Xenium toy dataset for unit testing.
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Hi @constantinpape,
I noticed the latest tag https://github.com/mobie/mobie-utils-python/releases/tag/0.4.5 is from April 2023. Do you plan to cut a release anytime soon? 🙂
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Hi, I am working my way through the Sopa Snakemake pipeline with one of our Merfish datasets.
A step that has been problematic is the `sopa explorer write`.
This takes a long time and the job wa…