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Dear Dr. Faircloth,
I'm attempting to phase UCE data using the phyluce [workflow](https://phyluce.readthedocs.io/en/latest/daily-use/daily-use-4-workflows.html#mapping). I performed the m…
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Hi,
After shift and splitting bams according to fragment size, I see amongst all bam the largest bam is NulceosomeFree.bam which is expected. However, when I run estLibSize (from ChIPpeakAnno packa…
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Hey,
I am trying to catch up with the latest developments, but alas am stumbling over the following error:
```
$ python airflowHPC/scripts/base_runner.py get_mass
[2024-08-19T09:46:17.402+020…
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**Current State**
The class variable `mapping` of the BaseEncoder class is a dictionary with the following structure
a dictionary with the following item:
- 'col' -> column name (str)
- 'mapping'…
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Hello,
We are currently testing the S3 API for one of our projects, as we've received several requests from users who want to send data to iRODS through S3.
We're pleased with the progress so fa…
sigau updated
1 month ago
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sometimes pandarus_remote seems to be unavailable so I was trying to run the calculations locally. Specifically I was trying to replace the function `create_regionalized_intersections` in bw2_lcimpact…
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Hi,
i have a problem because e.g. Ctrl+J mapping is already defined in Latex-Suite
and there is an error:
`Cannot define imap `` to `MarkersJumpF` in (:source):{(unset
)}: a previous global mappi…
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[ ] Run DIAMOND on all input reads (after deduplication and host-mapping)
[ ] Do some analysis with MEGAN or if MEGAN does not have a command-line interface, some alternative [RESEARCH]
[ ] mark th…
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The existing shortcuts are good defaults but some might want something different.
Work required:
* converting existing shortcuts to UserSetting entries stored in DB
* settings page where people…
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Conclusions from: #13
We found that correcting the kmer count by correction = (1-err)^k (count / correction) seems to work out fairly well.
We still need to handle the information loss from th…