-
I am getting an error when attempting to download data using QuratedAtlasQueryR, but only while using WEHI's HPC. This code runs fine locally on my laptop.
The code:
```
blood_metadata
filter…
-
Hi @ChiLiubio
Hope you are doing good
I am following the tutorial and getting through the codes and overcoming the errors.
Now While trying to plot a relative abundance, I am getting an error
I r…
-
Hi,
I am encountering this error when I try Leidenalg. Does anyone knows what is going on?
```
seu sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running…
-
**Describe the bug**
I am unable to get exactly the same Arrow files when using BAM and fragment file inputs from the same data set. For example, using the possorted_bam output from 10x and the fragm…
-
Hello,
I'm trying to work through the sketch integration vignettes with the latest version of Seurat V5 from Github.
When I try to run either:
```
object
-
**Describe the bug**
I'm creating a custom panel for iSEE using the function 'createCustomPlot'. This custom panel only generates a ggplot object and receives column selections from a single table, i…
-
Hi,
This is related to https://github.com/saeyslab/multinichenetr/issues/22
No results are returned when running `get_top_n_lr_pairs`. It seems that the reason for this is because in the table `…
-
I am getting an error when trying to load an h5 file (GSE190889_annoted_fullsize.h5) I downloaded from GEO https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190889
```
suppressPackageStartu…
-
StartracDiversity(immuneTCRgene, type = "Cancer", sample = "patientNumber", by = "overall")
[2023-12-17 21:13:42.644434] initialize Startrac ...
Error in (function (cl, name, valueClass) :
as…
-
Hello,
I am currently trying to merge 3 multiome datasets. The pipeline works fine for me up until adding the Gene Expression Matrix to the proj object.
proj