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I try to pretrain blip2 on a slurm cluster, but it seems that the current programme does not support distributed training on slurm by default. Any advice on it?
| distributed init (rank 0, world 1)…
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**Describe the bug**
MaxDIA (tsv library) got stuck at DIA library search 1 Done. (for several hours), and cannot move to the next step.
If I force MaxDIA to run DIA library search 2 or 3, there wi…
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My University's HPC cluster allows me to run the Kraken2 databases upto 490GB of RAM per node using SLURM. I've tested trying to run the nt database across multiple nodes to allow for the 720 GB of RA…
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@mslacken @e4t The documented command to upgrade slurm is `zypper install --force-resolution slurm_VERSION`, e.g. `slurm_20_11`. This means you need to know the version number to include it in the com…
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Spack errors on 'detected uninstalled dependency' error when trying to reinstall a stack where an external package was registered as having been built with a given compiler and the `package.py` file f…
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It took me quite some time to ultimately figure out how to set the `custom_attributes` kwarg in `JobAttributes`. I think it warrants a brief section in the docs and a clearer docstring.
Basically, …
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See `snakemake` new feature: https://github.com/snakemake/snakemake/pull/1397
This is a more efficient and better way to query for job statuses than `bjobs `, but rather complex to implement. An im…
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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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**Describe the bug**
During the first neighbour list build, after AutoPas has switched to this container, VarVerletLists don't perform as expected. The neighbour list build takes significantly less t…
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### Summary
A MapNode gets stuck trying to submit a job to the cluster.
### Actual behavior
I have a data loading function that passes lists into a MapNode. Each subnode that the MapNode creates …