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Hello,
I am trying to use DISCVRSeq in replacement of gatk 3.7 CombineVariants.
I use the :
java -jar ~/DISCVRSeq/DISCVRSeq-1.3.31.jar MergeVcfsAndGenotypes -R ~/hg19_UCSC_wo_hap/fasta/hg19.wo_hap…
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Hello! I am writing to ask you if you could list me what the outputs of each of the three somatic modules should be.
In fact, after the cellscan module I get the following warning:
INFO Monopogen.…
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Currently sample names in different output VCF files have different, and perhaps not the most obvious name. 😊
Setting a sample name up front in the pipeline, like with a family / pedigree or run c…
dnil updated
11 months ago
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Hi Melanie,
Thanks for developing such amazing tool!
I encountered a problem when I want to view the vcf file using IGV or JBrowse, where we have to zip and index the vcf file prior to viewing. I…
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```##ALT=##INFO=```
```##FORMAT=##FORMAT=```
Missing newline
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Hi!
I miss an option to report all sites in VCF outupt, even the ones without genomic variants.
That would allow me to flag potentially non-informative sites, e.g. with low read depth. Application…
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After some discussion the bcf format is moving to a slightly modified vcf format (see https://github.com/MRCIEU/gwas_harmonisation/issues/15 for info)
I have made a new branch in this repository ca…
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```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…
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Hello,
back in July a German Firefox OS user contacted me via email asking for help concerning a migration to Firefox OS.
He had exported his contacts to .vcf in several ways on Microsoft but found …
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```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…