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I ran the pipeline on my laptop like this:
``` sh
time sh lincRNA_pipeline.sh -c sample.data/cuffcompare_out_annot_no_annot.combined.gtf -g sample.data/Brapa_sequence_v1.2.fa -r sample.data/Brassica_…
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**Notebook title**: generally, most
**Notebook url**: generally, most
## Issue description
In updating the notebooks and the "Author" section, I have been adding this information:
```
## Auth…
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see also #755
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We should check if we adhere to the 9 recommendations by scicodes:
https://peerj.com/articles/cs-1023/
https://scicodes.net/best-practices-for-software-registries-and-repositories/
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```
I've taken a look over jBCrypt and have a few suggestions for cleanups and
improvements to the test coverage.
Briefly;
* more tests for invalid input checking
* fix use of a StringBuffer to sto…
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If a user has not been whitelisted on the site, they should not be presented with an option to change their username (because this will fail).
Instead, the username should be shown as "Guest".
There…
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Hi,
We have an open source project that is using the Forge library for cryptography, and one of our contributors pointed out that the preambles copyright and license declarations in the code files fo…
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Identical bug is detected in CLB and in PREVIEW website: accepted species name does not shown in a search index in both Browse & Search tools. (front end? back end? - for attention of @mdoering )
T…
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I was recently added as a collaborator on the repository for the [`vim-snakemake`](https://github.com/ibab/vim-snakemake) plugin. Per [discussion in this issue](https://github.com/ibab/vim-snakemake/i…
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A similar case to #280, mostly logged for double-checking the fix proposed there, after it's been applied.
Bird with higher taxonomy mapped to beetle group based on mis-mapped specific epithet / scie…