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Please include:
- the version of pheweb you're using, gotten from `pheweb -h`. If you're not on the latest version, consider upgrading with `pip3 install --upgrade` and trying again.
Hello.
I …
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Hi Tim,
What does the following error message mean? How may I fix it?
FragmentHistogram(object = SH2E16, group.by = 'nucleosome_group', region = 'chr1-1-10000000')
Error in .headerTabix(file, .…
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**Describe the bug**
Maelstrom errors when running with default parameters.
**To Reproduce**
gimme maelstrom -N $SLURM_NTASKS /rds/user/cjr78/hpc-work/ATAC/gimmemotifs/maelstrom_forkhead/maelstro…
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Build of gdbb6160 fails on CentOS 6.8 using gcc (GCC) 5.2.0
```
git clone --recursive git://github.com/ekg/freebayes.git
cd freebayes
git describe
==> may_release-779-gdbb6160
make
```
first issue…
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Hi,
I'm trying to genozip a `vcf` file directly from URL and I'm running out of memory.
This is my command:
```
genozip -@ 2 -B 1024 --force ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collec…
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when i install the up-to-date Isaac4，i have meet a problem.
`[ 40%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o
In file included from /home/so…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
(ru…
ghuls updated
3 years ago
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Hello,
we've been using the vxf2sex plugin from the 1.3 version of bcftools successfully for single sample VCF files thus far.
We recently started using this for prediction of gender for a trio VCF …
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Hi Randy,
This is Jeremy again. I've been using WGSExtract over the past few weeks and I've come across an issue. The program has been handling some of the low-quality BAMs I've given it pretty well …
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Hey!
I've noticed that inStrain is sorting my input BAM files even though they're already sorted, adding unnecessary computing time to the execution. Maybe it would be a good idea if inStrain check…