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Hi there,
I was running `velocyto run10x -m /ceph/project/....../mm10_rmsk_chrMTGTF.gtf /ceph/project/........../10x_scRNA_704-187_CD8P_GEX /ceph/project/borrowlab/shared/scRNASeq_blood_220210/xen…
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Via the attributes we could define a set of keys that should/could be present in a dictionary on each object in the list. Each key will become a column in the order they are defined.
Could look som…
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Hi, I have a multiomic dataset scRNA+scATAC built on Seurat. My obj Is saved as .RDS file but I can also store It on h5ad file. How can I use LINGER starting from It?
Thank you
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Hi,
I have a very puzzling demultiplexing problem which I have no idea why it occurs.
I have a couple of nanopore reads with bc1, bc2, bc3 but when I run the entire set, all go to the "None" bar…
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Hello, When I run the T8_Batch.ipynb, I found a problem as following:
`
After flitering: (20139, 11750)
adata = adata[:, adata.var[highly_variable]]: (20139, 3000)
STAGATE_slideseqv2mob_batch…
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Hey Quentin,
I've been trying to use the CLI workflow to segment a MERSCOPE dataset. After successfully creating patches I see that the formatting for the transcript.csv file was quite variable acr…
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Hello,
I was wondering which matrix should be used for final quantification results when running STARsolo with the `EM` mode enabled.
I noticed in the `raw` directory there is a `UniqueAndMult-E…
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Hi everyone, i try to print qr code but size is to small any body can help me?
i've trying read brother manual https://download.brother.com/welcome/docp100367/cv_ql1100_1110_eng_escp_100.pdf#page=78
…
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Hello everyone. First of all, I'd like to congratulate you on this incredible tool.
In my current project, I need to create cell x transcript matrices for my single nucleus human sample data genera…