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Is it possible to use PhyloCSF on mitochondrial genomes, i.e. with an alternative genetic code?
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Please add Windows prebuilt binaries
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We noticed in a head-to-head comparison of ORFs
predicted with canonical and non-canonical starts
that some longer ORFs with non-canonical starts
do not have any supporting reads in the extended 5'…
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# **OrthoFinder version 2.5.4 installed by conda:**
```
$ orthofinder -f rep_type_out_more_genomes_faa -M msa -S mmseqs -a 10 -o rep_type_out_more_genomes_faa_orthofinder_test
OrthoFinder versi…
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When we were trying to get the new code for Edward's ICP script ([codon_feature_analysis_refactor.R](https://github.com/riboviz/riboviz/blob/refactor-codon-pairs-436/rscripts/codon_feature_analysis_re…
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Good morning,
I'm currently facing an issue with your program. I've managed to install it successfully, but when using my own data, I'm encountering some problems. The error message I'm encounterin…
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Hi admin, I ran the code of the given 4DTV_calculation on my .axt file which is an alignment CDS file got after orthofinder. The output I received is like following. my .axt file contain the CDS seque…
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Hi,
I am currently trying to convert a gtf or gff3 file output from Augustus to a format that will be read by PASA. However, when I try to run this command:
convert_augustus_to_gff3.py -i august…
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Currently curation PRs are not being checked in terms of their potential to break Snakemake workflow execution. It would be good if the Snakemake workflow can be run through GitHub actions to ensure t…
pcm32 updated
2 years ago
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