-
Hello,
Thank you for making the amazing tool. I ran grn and got my adj.mtx file. However, I'm getting errors upon reading in the ranking dataset with ctx. I ran the below command.
pyscenic ctx…
-
Right now when a new user does pipx install biobricks they also need to run pipx install dvc or the system won't work.
I think this is because biobricks is probably running a command line version …
-
I couldn't find the following kinds of data in the current API when searching by association-type.
* Disease ⭤ Pathway ([example](https://api.monarchinitiative.org/api/bioentity/disease/MONDO%3A001…
-
One comment that came up during the February 10 discussion was the role of assay in determining the properties to capture for a gene fusion. There was a general opinion on the call that most assays in…
-
###System
VEP version: 111
VEP Cache: NO CACHE
OS: MacOS
tabix installed ? yes
###Full VEP command line
vep -vcf --hgvs --canonical --mane --flag_pick --force_overwrite --vcf_info_field ANN …
-
In the stable CanDI data (https://doi.org/10.7910/DVN/JIAT0H) the [README](https://dataverse.harvard.edu/file.xhtml?fileId=8151459&version=2.0) file says this:
```
### CCLE_expression.csv
Pipelin…
-
I'd like to request a term for microcephaly, short stature, and limb abnormalities.
OMIM: https://omim.org/entry/617604. DONSON is also associated with a more severe phenotype, https://www.omim.org…
-
**HP:0000007**
In the HPO browser the gene [`PAH`](https://hpo.jax.org/app/browse/gene/5053) is (correctly) associated with the mode of inheritance [`HP:0000007` (Autosomal recessive inheritance)](…
-
## Issue 1
## Describe the issue
I'm currently having issue running vep using docker.
The error seems to be caused by the directory issues but I cannot find the problem.
Is there any solutions t…
-
# Statement of issue
The UMLS uses SUIs as IDs for term strings. To replicate the SUI for terms from non-UMLS SABs, the generation script simply uses the base64-encoded version of the string as the S…