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Hello,
Thank you for this great tool.
I ran into this error that prevent ProteinPropeht from finishing the task. Do you have any idea how to resolve this?
System OS: Windows 10, Archit…
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# Current behaviour
Currently it is possible to export vector graphics of spectra as `.svg`. While this file format is well suited for many applications, there are some issues when using it with Mi…
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From the preprint, "MassIVE-KB contains a designated subset of 30,506,973 “high quality” PSMs, identified by applying a strict (∼0%) PSM-level FDR filter and then selecting at most 100 PSMs for each c…
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While trying to run the "small example" from the "Getting started" guide, I run into a Key error. No idea what is causing this though. I have attached the output log.
[output.log](https://github.c…
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Hello,
I have acquired DDA data with a timsTOF flex using MALDI. However, when I try to load the data into FragPipe I get an error. I have marked the data as Regular MS in the setup of FragPipe but…
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Hi there.
I have acquired Agilent QTOF LC/MS data (in centroid mode) and converted it w/ msConvert into mgf and mzML.
I have then imported each converted file into Sirius GUI. Depending on the con…
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[From an email from a Casanovo user]
I developed a new tool for peptide de novo sequencing and would like to compare its performace with Casanovo.But I have two questions regarding using Casanovo a…
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- Describe the issue or question:
Hi Nesvilab,
I want to generate DDA spectral library without DIA data. Fragpipe ran on linux HPC and used DIA-SpecLib_Quant workflow. All Thermo.raw files were co…
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Hi, I recently started working on putting together a TMT pipeline and am evaluating Sage as well as Comet/OpenMS/custom approach. My question has to do with processing SPS-MS3 data. I can see you've g…
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Dear
we are trying to run fragPipe (LFQ) with DDA file from thermo but we are getting error.
please see below the log
we checked all the possible issues but we were not able to solve it
many t…