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Add schematics for predixan and bulk RNA
Add roc curve
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- [ ] Have a quick start vignette showing some content similar to https://bioconductor.org/packages/release/bioc/vignettes/recount/inst/doc/recount-quickstart.html#2_Quick_start_to_using_to_recount ht…
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I am trying to analyse RNA-velocity for single-nuclei RNA sequencing data from 10X platform. I am not sure in detail how it calculates the unspliced/spliced rate when I run the command 'velocyto run10…
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Can't locate Env.pm in @INC (@INC contains: /home/groups/carilee/rna-pipeline/RSEM /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/pe…
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Thank you very much for writing this nice package to apply cna!
I am currently trying to apply the method on a Seurat dataset, but I am receiving following error on k:
`data_cna1
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With valiDrops 0.1.0 in R 4.3.2, x86_64-apple-darwin20, I get this error with one of 12 samples of my snRNA seq. experiment. The sample's data is not of good quality (~150 median features/cell, as aga…
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### Version
1
### DataCap Applicant
Genet
### Project ID
1
### Data Owner Name
NHGRI
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Websi…
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Hi,
is ```endseq: strand-specific coverages``` in this context referring to the strand specificity based on the underlying DNA reference or based on sense/antisense RNA transcription for strand-spe…
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Importing data that has missing probes in a platform is currently producing a warning that is too easily dismissed.
Missing probes are indicative of a problem with the platform.
This issue shoul…
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Hello!
I now have RNA-seq data and full-length transcriptome data from several tissues, and I used "Trinity genome-guieded" to get the transcript "Trinity-GG.fasta" of the RNA-seq . At the same time,…