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Hello, I was trying the SYNY using the configs you developed before (including just a few of the scaffolds from the genome), so my command was
run_syny.pl -a *.gz -outdir SUBSET_minimap --aligner…
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there is a help on issue #9339 but it doest work on new dot net ef core 8 class name is different is there any help to find class for generating migration ???
### Include provider and version i…
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Hi Sergey,
Thank you for creating such an impressive assembly tool! I recently tested both versions 2.0 and 2.1 using various genome coverages. However, I found that over 100 BUSCO genes are missin…
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### Description of feature
For NG50, the details are in [Supplementary Note 4: Assessing overall assembly quality](https://static-content.springer.com/esm/art%3A10.1038%2Fs41586-021-03451-0/MediaOb…
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I'd like to use inspector on phased haplotigs (from hifiasm; i.e., hap1.fa, hap2.fa) from a highly heterozygous plant species (the phasing looks good). I'm assuming I would run inspector against each…
pjm43 updated
3 months ago
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Hello,
I was trying to run the verkko 2.0 release on one of the Tree of Life insect genomes. The species is _Philedonides lunana_ with estimated heterozygosity 2.0% and estimated genome size 282Mb…
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Hi,
I ran HiSat2, MarkDuplicate, removed reads with the lower quality score than 40 and finally only kept properly paired reads. Scallop/StringTie and TransDecoder could predict UTRs but unfortunatel…
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Hey,
Just lost ~1 days' time not realising that -n doesn't imply changes to -p. Lesson learned, but wondering how we could better document for first time users. It was a particular issue for aviary…
wwood updated
3 months ago
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## User story
>As a curator
>I want the post uploadscript to work as expected
>So that I can use it
## Acceptance criteria
>Given I have uploaded a dataset using the upload script
>Whe…
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Hello,
Thanks for putting together a great package that's easy to use. Also, your talk at the BGA23 was fantastic in understanding how the package works.
I have more of a curiosity type questio…