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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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When I run scv.tl.rank_velocity_genes() on my own data (grouped by "Cell_type", and there are at least hundreds of cells per type), I see only four genes being ranked. Despite this, I can see that…
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Dear author,
Can bbknn integrate multiple variables?such as Platform and Individual.
Looking forward your reply
Siyu
>>> sc.external.pp.bbknn(mydata, batch_key=["Platform","Individual_…
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Especially when using `standard_scale = 'var'`, the scale values obscure each other if values are '0' and '1'. Is there a way to allow for off-center plotting of the scale values? Minimizing the font …
JuHey updated
4 years ago
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Many of the vignettes in this repository make `POST /search` requests to filter bundles based on their contents. For example, in the old [Download SmartSeq Expression Matrix for Scanpy notebook](https…
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Hello! First of all, thank you very much for developing the algorithm!
Due to stability issues with the hard drive, my process was interrupted after running 7/16 samples. I would like to ask if the a…
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Hello,
I'm encountering an issue while using scgen for batch correction. The training part works fine, but I'm facing an error when calling network.batch_removal(). The error message is as follows:…
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Hi - excellent software, thanks! -
but I do have a problem. If i load a disk backed dataset, I cannot run `sc.tl.score_genes`.
Given these two sets:
```py
ad = sc.read_h5ad('scdataset.h5ad', …
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#### ALL software version info
holoviews 1.15.4
matplotlib 3.7.1
numpy 1.22.4
pandas 2.0.1
panel 0.14.4
param 1.13.0
…
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Hello,
Thank you for your pipeline.
The first question is that the paul15 file is not available from the link you provided.
The second question is, since I cannot find the paul15 file, I used…