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theislab
/
scgen
Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
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Results are not consist with [tutorials/scgen_perturbation_prediction.ipynb]
#95
liaowenyu
opened
19 hours ago
0
fix bugs perturbation notebook
#94
chelseabright96
opened
2 weeks ago
1
get_marginal_ll not implemented for perturbation example model
#93
ajaynadig
opened
1 month ago
0
Batch_removal() AttributeError: Can only use .str accessor with string values!
#92
AlinaKurjan
closed
4 months ago
1
TypeError: Can't instantiate abstract class SCGEN with abstract methods setup_anndata
#91
GGboy-Zzz
opened
7 months ago
1
tutorial does not run -- version issues with scvi-tools
#90
kiristern
closed
4 months ago
5
difference between SCGEN and SCGENVAE
#89
huawen-poppy
opened
9 months ago
0
scgen Literal deprecation error
#88
abuchin
opened
9 months ago
1
fix cell label assignment issue in batch removal
#87
Hrovatin
closed
9 months ago
0
Batch correction incorrectly assigns cell labels
#86
Hrovatin
closed
9 months ago
4
Question about get_decoded_expression() and predict() functions
#85
znavidi
opened
11 months ago
0
change python-igraph to igraph
#84
szhorvat
opened
11 months ago
0
Error in network.batch_removal() due to missing positional argument in AnnData.concatenate()
#83
macelik
opened
1 year ago
5
Update depreciated `AnnData.concatenate`
#82
quentinblampey
opened
1 year ago
2
Accurate requirements to setup the environment on Windows
#81
pbilinskyi
opened
1 year ago
0
How to reproduce paper results
#80
SZ-qing
opened
1 year ago
5
Poetry build system update
#79
adamgayoso
closed
1 year ago
0
fix setup.py to allow pip installing from source
#78
szalata
opened
1 year ago
3
Update concatenation function during batch removal
#77
mumichae
opened
1 year ago
1
DeprecationWarning as error when importing scgen
#76
mumichae
closed
1 year ago
7
Use `LossOutput`, update python scvi-tools versions
#75
martinkim0
closed
1 year ago
0
How to use data with categories unseen by a trained model
#74
majpark21
opened
1 year ago
1
I solved this and several other incompatibilities in my code by going back to tensorflow version 1.15.4
#73
rpsipl2021
closed
1 year ago
0
Unequal size of perturbated size
#72
XinyeZhao
opened
1 year ago
0
Inconsistent batch removal when loading saved scGEN model
#71
TemiLeke
opened
2 years ago
0
Errors while reading salmonella h5ad files
#70
bitcometz
opened
2 years ago
1
labels_key mismatch in scgen.SCGEN.setup_anndata()
#69
johnjeang
opened
2 years ago
0
Questions about drug perturbation prediction using cell line data
#68
GA-1101
opened
2 years ago
0
Questions about building predictive models
#67
GA-1101
opened
2 years ago
0
ImportError: cannot import name 'setup_anndata' from 'scvi.data'
#66
GA-1101
closed
2 years ago
1
AttributeError: module 'scgen' has no attribute 'VAEArith'
#65
pcifist
closed
2 years ago
4
ImportError: cannot import name 'setup_anndata' from 'scvi.data'
#64
shangyf-stu
closed
2 years ago
1
AttributeError: 'SCGEN' object has no attribute 'summary_stats'
#63
YY-SONG0718
closed
2 years ago
1
pip install scanpy needs version bump
#62
jvstokes
closed
2 years ago
2
Scvi tools version bump
#61
adamgayoso
closed
2 years ago
1
Batch effect removal with only one cell type
#60
ryeking2010
closed
2 years ago
1
Normalization question for batch_removal
#59
ryeking2010
closed
2 years ago
1
Questions on batch removal tutorial
#58
Pazuzzilla
opened
2 years ago
2
Correct the typo
#57
k4ngyh
closed
2 years ago
0
Scvi tools bump
#56
adamgayoso
closed
2 years ago
0
Update LossRecorder return
#55
adamgayoso
closed
2 years ago
0
Implement abstract `setup_anndata` method in SCGEN and pin scvi-tools version
#54
watiss
closed
2 years ago
2
TypeError: Can't instantiate abstract class SCGEN with abstract methods setup_anndata
#53
BrianLlll
closed
2 years ago
8
[pre-commit.ci] pre-commit autoupdate
#52
pre-commit-ci[bot]
closed
2 years ago
0
Question about saving the scgen model
#51
Lin-K76
closed
2 years ago
2
Please help with the train_pbmc.h5ad
#50
bitcometz
closed
2 years ago
2
ValueError: could not convert integer scalar
#49
acmullen-med
closed
2 years ago
4
Questions about redesign for latent space
#48
HelloWorldLTY
closed
2 years ago
1
Tutorial Data gets not found?
#47
ShaowenJ
closed
3 years ago
5
Update main documentation page
#46
adamgayoso
closed
3 years ago
1
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