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theislab
/
scgen
Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
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Update main documentation page
#46
adamgayoso
closed
3 years ago
1
Give tutorials adapted first cell of scvi-tools tutorials so they run in colab
#45
adamgayoso
closed
3 years ago
1
Test all functionality in tests
#44
adamgayoso
closed
3 years ago
5
Predict function should have `ctrl_key` and `stim_key` params instead of `conditions` dict.
#43
adamgayoso
closed
3 years ago
1
Version 2.0
#42
adamgayoso
closed
3 years ago
1
More scvi-tools changes
#41
adamgayoso
closed
3 years ago
0
initial changes
#40
adamgayoso
closed
3 years ago
0
Sketch new added
#39
saif007s
closed
3 years ago
0
Bimodal data?
#38
levinhein
closed
3 years ago
4
AttributeError: module 'tensorflow' has no attribute 'placeholder'
#37
anjugopinath
closed
3 years ago
2
How to save scgen trained model?
#36
levinhein
closed
3 years ago
1
Number of epochs
#35
levinhein
closed
3 years ago
1
Error in "pred, delta" part. KeyError: 'condition'
#34
levinhein
closed
3 years ago
3
FutureWarning: is_categorical is deprecated and will be removed in a future version. Use is_categorical_dtype instead if not is_categorical(df_full[k]):
#33
levinhein
closed
3 years ago
1
batch_removal AssertionError
#32
Daliya-K
closed
3 years ago
1
Questions about balancer function
#31
XiajieWei
closed
3 years ago
1
batch_removal() throws TypeError: concatenate() missing 1 argument: 'self'
#30
kleurless
closed
3 years ago
2
Algorithm not actually using selected TA indicators
#29
yoazmenda
closed
3 years ago
1
ImportError: cannot import name 'IndexMixin' from 'scipy.sparse.sputils'
#28
levinhein
closed
3 years ago
2
Can I use scGen for Drug Responder and Non-responder prediction?
#27
levinhein
closed
3 years ago
1
Example scGen issues?
#26
Lin-K76
closed
3 years ago
11
Keras 2.4.3 incompatibility with TensorFlow 2.1?
#25
Lin-K76
closed
3 years ago
1
Metadata shuffled when applying batch correction
#24
fhausmann
closed
3 years ago
2
install error: ERROR: No matching distribution found for tensorflow==1.13
#23
rlittman16
closed
3 years ago
3
scgen running on GPU?
#22
vkedlian
closed
3 years ago
3
Only runs on single core?
#21
prete
closed
3 years ago
8
Fix #19
#20
alirezaomidi
closed
4 years ago
0
Wrong path to save the model in the keras model
#19
alirezaomidi
closed
4 years ago
0
Is the cell type label a must?
#18
yzcv
closed
3 years ago
5
stop batch correction cell index scrambling, and retain raw if present
#17
ktpolanski
closed
4 years ago
0
`scgen.batch_removal` doesn't save `adata.raw`
#16
cartal
closed
4 years ago
3
predict() argument missing for 'cell_type_key' and 'condition_key'
#15
gaelcge
closed
4 years ago
2
AttributeError: module 'tensorflow' has no attribute 'placeholder'
#14
cartal
closed
4 years ago
65
ImportError: cannot import name 'shuffle_data'
#13
rene-rex
closed
4 years ago
0
Installation of current master branch fails
#12
rene-rex
closed
4 years ago
1
ValueError: Variable encoder/dense/kernel/Adam/ already exists if model is trained in a loop
#11
rene-rex
closed
4 years ago
2
error at scgen.VAEArith()
#10
cjhong
closed
4 years ago
0
missing dependencies
#9
mumichae
closed
4 years ago
4
to_latent problem
#8
mxposed
closed
4 years ago
5
Add annotations to corrected object
#7
cartal
closed
4 years ago
2
Add annotations to corrected object
#6
cartal
closed
4 years ago
0
Bc fixes
#5
mumichae
closed
3 years ago
0
batch_remove() function do not return cell name, only gene name in normalized matrix
#4
nhuhoa
closed
4 years ago
0
fixed missing concat_batch key and missing obs columns
#3
mumichae
closed
5 years ago
0
Devel
#2
M0hammadL
closed
5 years ago
0
Issue with scgen.batch_removal function
#1
nhuhoa
closed
5 years ago
2
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