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Hello,
I am interested in analyzing enrichment of transcription factors instead of just histone marks in the genome and to that end, I am using diHMM to do the genome segmentation.
I used Chro…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ibn-salem/sevenC
Confirm the following by editing…
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Hello,
I came across the term 'transcription antitermination factor activity, DNA binding', annotated once by EXP in SGD to SPT6/S000003348 based on a single paper.
The SGD description does n…
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Hello,
All the literature I find about transcriptional attenuation (GO:0031564) and anti-termination (GO:0031564) indicate that this only occurs in bacteria and in some viruses (including the lite…
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consider for:
- [ ] SPCC63.08c atg1 autophagy serine/threonine protein kinase Atg1
- [ ] SPAC1556.03 azr1 serine/threonine protein phosphatase Azr1
- [ ] SPBC18H10.15 cdk11 serine/threonine pr…
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2 EXP annotations, usage does not match the definition, and the cited reference (PMID:83322119) does not describe what RNA binding transcription factor activity is.
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We explored fimo settings in #37 and found that using the phastcons scores did not help us that much. Yijie thought using histone information would also help.
jfear updated
6 years ago
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Hi all,
While curating a paper yesterday I stumbled across this rather interesting relationship for GO:0001190 - transcriptional activator activity, RNA polymerase II transcription factor binding w…
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For the nodes populated for PTN000271860, I am wondering whether the transcription factor terms are appropriate. This is a subunit of HAT complexes, rather than a transcription factor per se.
Term: t…