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Hi,
I am very interested in the methods of GFAse. I have carefully read your paper ‘Phased nanopore assembly with Shasta and modular graph phasing with GFAse’, but I don’t quite understand the Com…
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Vaxrank fails when it tries to find the contig 'chr14_GL000194v1_random' in the reference GRCh38, despite this being a valid contig name.
**Command run:**
vaxrank
--vcf /home/ubuntu/data/Sample…
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Hi,
I'm trying to build the project annotationPipeline but got an error:
Test set: org.cbioportal.annotation.SpringBatchIntegrationTest
----------------------------------------------------------…
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"This resource consists of mouse sperm lines for ENU-induced single-SNV mutations across more than 10,000 genes. In total there are over 250,000 SNVs that have been computationally predicted for effec…
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### Description of the bug
As seen in the attached log file, the pipeline stops working and cycles in error with amazonaws. I am new to nf-core so I am unfamiliar with how all the parts of the pipeli…
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* At the moment, we write split VCFs then when complete, launch all of the jobs to process them. We should just launch them as soon as we write them.
* Upload step model should have an option to "dele…
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I've got two VCF files from the same sample. I can combine them with `bcftools concat --allow-overlaps A.vcf.gz B.vcf.gz` but I can't find a way to merge identical entries. They can be removed with `-…
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## 🐛 Bug
```
import torch
def fn():
return torch.ones([])
torch.jit.script(fn)
```
Error:
```
RuntimeError:
Arguments for call are not valid.
The following variants are availabl…
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When crawling for the second time, H3 writes revisit records, like this:
```
2013-02-22T14:43:42.922Z 200 2981 https://assets.digital.cabinet-office.gov.uk/static/apple-touch-icon-72x72-2ddbe…
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So we have asynchronous fault tolerance strategies for `CompletionStage`-returning methods, but those only apply if the method is also `@Asynchronous`. If the method is _not_ annotated `@Asynchronous`…