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The paste filter in htmlFilter.ts currently strips formatting when pasting in night mode. The majority of pastes are coming from pages with light backgrounds, and thus have dark foregrounds, which ten…
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Hi tseemann,
Thanks for the great tool. I am experiencing an issue with validating files for submission to ENA after conversion with EMBLmyGFF3 which seems to be related to an issue in the output g…
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Hello @rrwick and team,
I'm having trouble when masking recombination regions in an alignment of ~370 bacterial genomes, generated with snippy.
The alignment itself looks good, with all the sequenc…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Hello, I executed the following workflow using chromwell behind a proxy
$ java \
-Djava.net.useSystemProxies=true \
-Dhttp.proxyHost=202.241.78.237 -Dhttp.proxyPort=8080 \
-Dhttps.proxyHost=202…
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How would it be possible to have a summary made out of a chunk? With a prompt named: `summary_gen.yaml`
**_EDIT: While I had trouble getting my head around the code in `./original`, I started from …
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Add package with parts (CDSs, UTRS, SPs, etc.) for plants
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Hello Zach,
Thank you for this great package!
I'm trying to construct a network including bacterial and fungal communities with an ASV table.
I got an empty network and a warning message `Op…
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```
What steps will reproduce the problem?
1. I run blastp separately for every strains as following:
ncbi-blast-2.2.29+/bin/blastp -evalue 1e-05 -outfmt 6 -query 0001.fasta -db
genesOfAllStrainsDB…
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Hi, I have two 11Gb paired end fastq file and am trying to run virmap with it, but it has been taking more than 36 hours for the job to run and it still hasn't finished (with 48 cores). I would like t…