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This issue was created in order to define a continuous data message type.
Continuous, or signal data, associates a value with sequence base pairs. This can be raw experimental data, such as ChIP-Se…
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I need a range of data to check IGV.js. File types (https://github.com/igvteam/igv.js/wiki/Tracks):
- [x] annotation: BED
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- [x] annotation: GFF
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- This is GFF3: Others may fail silently. Do…
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I'm trying to run multiBigwigSummary but I'm getting a segmentation fault. I've tried just running it on a single bigwig (down from the 12 I was originally trying). These bigwigs are converted from be…
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I have a BAM file generated using (1) by samtools 1.2. Then, I converted it into bedgraph file using (2) by bedtools2. Finally, I tried to get bigwig file from bedgraph file using (3). I got the fol…
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I have the setup as described in #2124
Now it seems like the test `ASCIIGenome -h` runs, but still the tests fail. I have appended the error message below. Does anyone have an inkling about why my t…
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It would be useful if **missing2ref** considered the variant site coverage by reads to determine whether to replace the missing genotype with the reference homozygous one.
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i've been able to successfully set up tracks using both plain bed and bigwig files. however, i am unable to get it to display bedgraphs.
a bit of investigative work has tracked down that it might no…
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I'd like to report a small bug in methylation_extractor, when one tries to obtain a cytosine_report in the same step as the extraction. If you specify the option -o output_folder, once the bedGraph an…
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Hi,
I have compiled successfully in Centos 6.7, but get a runtime error when analyzing data.
During the first run, fasta index is built ok, then it fails. Next runs fails directly.
[error-message.txt…
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IGV is awesome. One extremely useful feature would be to be able to scale the data range of multiple tracks simultaneously and/or to autoscale groups of tracks to the same data range. If you are usi…