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Proposal for a sublineage of BA.5
Earliest sequence: 2022-03-10 (South Africa)
Countries detected: mainly South Africa (58 %) but also Australia, Austria, Belgium, Botswana, Brazil, Canada, Den…
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**New lineage proposal:** 1,887 BA.2.9 sequences with Spike_ins213GRG + Spike_V213S from Denmark (as of April 23, 2022)
**by (alphabetical order):** Andreas Bergthaler; Fabian Amman; Lukas Endler…
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Dear DAISIEmainland maintainer,
Thanks for `DAISIEmainland` and its many tests to ensure its correctness!
Here I suggest to loosen up a contraint, as I feel (and tested informally) that this is …
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Currently, `plot_island_tbl` works on an `island_table`, where the `island_table` does not yet separate for an omniscient/emperical observer. As far as I understand (see email exchange below), this is…
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### Description
**Recombinant between**: AY.x & BA.1.1
**Earliest sequence**: 2022/1/19 (US-CO)
**Most recent sequence**: 2022/2/26 (US-DC)
**Countries circulating**: US (CO, ND, DC, OH)
**Likely…
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Eight potential BA.1/BA.2 recombinant sequences with epidemiological linkage were detected in Finland. The recombination breakpoint seems to be downstream from those reported from Denmark (issues #447…
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Hi there! I've only just discovered nf-core and this pipeline, i'm very impressed with how polished it is.
## Is your feature request related to a problem? Please describe
I noticed that nextclade…
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**Current Behavior**
Logistic grown, when run on the default example build only produces valid data for a small number of nodes, with most being assigned `NaN` like so:
```json
{
"generated_by":…
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Dear DAISIEmainland maintainer,
Thanks for `DAISIEmainland` and its broad range of functionality it provides.
I developed a simple function called `plot_mainland` (which I'll put in a Pull Reque…
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Just make the tests in `test-plot_island_tbl.R` produce beautiful tables.
No need to separate between ideal and empircal data yet, this depends on #55.