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Hi Ruochi, thanks so much for developing Higashi & FastHigashi.
I've been trying to obtain the cell-level imputed with neighbor matrices following the newer Fast-Higashi [tutorials/Ramani et al.ipy…
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Hi William,
I ran enloc on my dataset and had an error message " Illegal division by zero..."
Snapshot or error message in below:
![image](https://user-images.githubusercontent.com/20730081/28879…
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- Make script for figure 3.2 (unique map, multi-map, unmapped) & include discussion of what if too many cells to visualize? -> fit linear or exponential distribution & find outliers
- Discuss Droplet…
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Currently, `as.data.frame()` inserts `NA` values whenever the annotation `"X"` is applied to a cell value.
https://github.com/statistikat/STATcubeR/blob/1158d375c310ea3856a6d0b3eb25400161bfafc1/R/…
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Good day,
We are about to start using souporcell as the main tool to demux our single cell data, for which we also have genotyping information.
It turns out that using --commonvariants provides bett…
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Hi! We're encountering an issue with the `KernelExplainer` where if either the background dataset or the example set we're explaining has nulls, SHAP fails with `TypeError: ufunc 'isfinite' not suppor…
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Title: Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study
# General Information
## Please …
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Hi Ivan, excellent work and thanks for making the codes open! I've read your codes and the markdown for how it works. It seems that there is no noise input for GAN and the partial GAN according to you…
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In the case where we have missing data on the testing set, is the imputation done based on the mean&mode of the testing set or the training set?
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Hello SuSiE developers,
I used SuSiE to run simulations and found that SuSiE performed differently between WGS genotype imputed genotype. I designed 2 sets of simulations: 1) I used real WGS data a…