hemberg-lab scRNA.seq.course issues

hemberg-lab / scRNA.seq.course

Analysis of single cell RNA-seq data course

https://www.singlecellcourse.org

GNU General Public License v3.0

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issues

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Cannot open jupyter notebook linked by the docker container

#188 gauravmoghe opened 1 year ago
1
Leidenalg not found error

#187 SimonDMurray opened 1 year ago
1
There is no data/tung folder

#186 Nayrouz109 closed 2 years ago
4
Minor edits

#185 molecules opened 2 years ago
0
Question about Exercise 2 in section 5.2.3 (Matrix Statistics)

#184 BAREJAA opened 2 years ago
0
Incompatibilities between R and R studio

#183 royassis closed 1 year ago
1
code missing in the biological-analysis#clust-methods

#182 huang-sh closed 1 year ago
3
Can I change the docker image port ？

#181 huang-sh closed 2 years ago
3
Course files cleanup

#180 prete closed 2 years ago
0
Intermediate update v1

#179 apredeus closed 2 years ago
0
File molecules.txt missing

#178 SteliosKI closed 1 year ago
5
Added GitHub action

#177 SimonDMurray closed 3 years ago
0
2021 updated course

#176 SimonDMurray closed 3 years ago
0
Can not run the docker image

#175 anglixue closed 3 years ago
4
fix broken figure links (#167)

#174 nyaapass closed 3 years ago
1
All Simon's changes

#173 SimonDMurray closed 3 years ago
0
Issues with defunct functions

#172 ManfrediC closed 2 years ago
2
function isSpike is deprecated

#171 dianaliduke closed 4 years ago
2
Molecules.txt from tung data

#170 dianaliduke closed 4 years ago
0
2020update

#169 jianye0383 opened 4 years ago
0
Could you please provide some intermediate files so people like me can go through the whole classes?

#168 zzygyx9119 opened 4 years ago
2
STAR_explanation.png is missing

#167 yeroslaviz closed 3 years ago
3
"trim_galore" command could not be found

#166 zzygyx9119 closed 4 years ago
4
can not open "file:///home/jovyan/.local/share/jupyter/runtime/nbserver-6-open.html"

#165 zzygyx9119 closed 4 years ago
2
fix latex error on search.Rmd building step

#164 SimonDMurray closed 4 years ago
0
switch off pdf building

#163 SimonDMurray opened 4 years ago
0
Add sparse vs dense matrices to intro to R section.

#162 tallulandrews opened 4 years ago
0
Update CCA for Seurate v3 - all different.

#161 tallulandrews closed 1 year ago
1
update of the seurat chapter

#160 sballereau opened 5 years ago
0
Mentioning Cambridge based company and software. Added Read 1 QC figure.

#159 seb-mueller opened 5 years ago
5
updated search.Rmd

#158 thjimmylee closed 5 years ago
0
Updated `scfind`

#157 thjimmylee closed 5 years ago
0
Update 10-L3-Intro-to-Bioconductor.md

#156 avallonking closed 5 years ago
2
harmony

#155 ktpolanski closed 5 years ago
1
Simulated vs Real data vs Integrated RNA seq data analysis

#154 AswinSSoman closed 2 years ago
2
Add SCnorm & scone to normalization

#153 AswinSSoman closed 4 years ago
2
Fixing typos and updating code for plots in scater

#152 stephaniehicks closed 5 years ago
3
Clustering and Marker Gene Identification: SC3 vs Seurat

#151 igordot closed 1 year ago
3
Turn off the progress bar for scaling procedure

#150 ChuliangXiao closed 5 years ago
1
Proper citation for destiny

#149 flying-sheep closed 5 years ago
1
detect outlier in plotPCA

#148 JiaruiMi opened 6 years ago
0
How to run browser in Docker?

#147 WT215 closed 6 years ago
1
Add Slingshot to Pseudotime

#146 tallulandrews opened 6 years ago
0
obscure normalization results

#145 MichaelPeibo closed 6 years ago
1
Unable to download PDF version of course material

#144 leonfodoulian closed 6 years ago
1
Notes from Berlin

#143 tallulandrews opened 6 years ago
1
Add to visualization

#142 tallulandrews opened 6 years ago
0
total number of genes for PCA page incorrect

#141 tallulandrews opened 6 years ago
0
Updating pseudotime chapter.

#140 davismcc closed 6 years ago
0
Missing files. The latest added part "Processing RAW scRNA-seq data" has no raw data in git.

#139 liusyscholar closed 6 years ago
2