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We have a bug in `with_nix()`.
```r
> rix::rix_init(project_path = "_test")
### Bootstrapping isolated, project-specific, and runtime-pure R setup via Nix ###
==> Existing isolated nix-R pro…
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Expected the fold change column in the `FindAllMarkers` output data.frame to be named `avg_diff` when using the "scale.data" slot, but it is named `avg_log2FC`.
```r
library(Seurat)
library(Seu…
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The package was removed from CRAN because it depends on the deprecated `gWidgets` package.
Do you plan to port `RQDA` to `gWidgets2`?
sjewo updated
2 years ago
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Hello,
I am encoutering an error when trying to use saveHDF5SummarizedExperiment.
```
> saveHDF5SummarizedExperiment (se, dir = "GSE205037/files") -> h5se
Error in h(simpleError(msg, call)) :
…
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Hi,
After updating the release version of the package to 1.6.1, the function `toSpatialFeatureExperiment()` stopped working. Here is a minimal reproducing example:
```r
library(SpatialExperimen…
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Tab-autocomplete of table column names is slower when using dbplyr 2.4.0+ than 2.3.4. The code below reproduces the issue on my machine, which is on RStudio Version 2023.12.1+402 (2023.12.1+402). `ses…
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When I try to convert a SPATA object to Seurat, I get the following error using `SPATA2::asSeurat()`:
```
> seurat_t313
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Hi there, it looks like the server is down at https://gwas-api.mrcieu.ac.uk/. I have been getting this error message since 7/26. Wondering if you could provide any estimate of when the server will be …
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```
library(brms)
library(insight)
set.seed(12901)
d
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Using the BOLD API (latest stable version) to search for different species genus we noticed that for one of them we were running into errors. At first it seemed like an issue with missing columns in t…