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Hi, I'm trying to use TRUP to identify fusions in my RNAseq data, using my 64-bit Mac OS X Yosemite 10.10.2.
I have an issue performing the initial Quality Check, with both `fastx_quality_stats` and …
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I am attempting to convert my fasta files to fastq using the command:
seq -F contig.2.fasta > contig.2.fq
but I keep getting:
seq: invalid option -- F
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hello dear developers of scPipe
I have an issue in running sc_trim_barcode at the first step of scPipe pipeline for single-end data. Running sc_trim_barcode like the command below, resulted in " no…
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```
What steps will reproduce the problem?
1. in the sample TableDemo.java the table feed url is
baseUrl/feeds/spreadsheetKey
2. the FeedURLFactory getTableFeedUrl() function, when passed the same
spr…
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```
[11:57:50] [info] - Extension Info: v1.6.3
[11:57:50] [info] - Browser Info: 5.0 (Windows NT 6.1; WOW64) AppleWebKit/535.7
(KHTML, like Gecko) Chrome/16.0.912.75 Safari/535.7 CoolNovo/2.0.0.9
[11…
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(you don't have to strictly follow this form)
**Describe the unexpected behaviour**
When using chdb for inserting data into a table (classic MergeTree table) in the local filesystem, sometimes it …
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```
What steps will reproduce the problem?
1. in the sample TableDemo.java the table feed url is
baseUrl/feeds/spreadsheetKey
2. the FeedURLFactory getTableFeedUrl() function, when passed the same
spr…
-
```
What steps will reproduce the problem?
1. in the sample TableDemo.java the table feed url is
baseUrl/feeds/spreadsheetKey
2. the FeedURLFactory getTableFeedUrl() function, when passed the same
spr…
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When we run coverm:
```shell
/home1/jialh/anaconda3/envs/MAG/bin/coverm contig \
-t 8 -r /home1/jialh/brain/CAGs/CAGs/cdhit_rep_seq.fna \
-1 /home1/jialh/brain/JPN/preprocessing/01_processing/05…
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[multiqc_report.zip](https://github.com/trinityrnaseq/trinityrnaseq/files/9712572/multiqc_report.zip)
Dear author, thanks or your excellent work.
I'm using trinity to assemble my plant sample. It …