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lh3
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seqtk
Toolkit for processing sequences in FASTA/Q formats
MIT License
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seqtk telo can't find results with my data
#215
ksc289
opened
1 week ago
1
Error
#214
aupadrasta
opened
1 month ago
1
`sample` command silently produces incorrect empty reads
#213
rickymagner
opened
1 month ago
1
subseq silent fail on malformatted fq
#212
cmsoulette
opened
2 months ago
0
CutN fails when sequence begins with Ns
#211
hloucks
opened
2 months ago
0
Quality scores
#210
lskatz
closed
3 months ago
1
converting fasta to fastq
#209
keecarter
opened
3 months ago
2
buggy behavior with seqtk subseq command
#208
franciscozorrilla
closed
4 months ago
1
DNS Resolution Warning with Singularity Container
#207
ua-micro-cha
opened
4 months ago
0
Is the "sample" feature subsampling without replacement?
#206
AprilJauhal
closed
5 months ago
1
`seqtk hpc input.fq` ignores the quality and converts to .fa
#205
aafshinfard
opened
5 months ago
0
seqtk_telomere_reads_output
#204
Wenfei-Xian
opened
8 months ago
0
Seqtk to count sequences same SeqID
#203
silvia1234567890
closed
9 months ago
0
seqtk comp count CpG
#202
linpei26
opened
11 months ago
0
seqtk telo -m works partially with 8mer wasp telomere
#201
jbh-cas
opened
1 year ago
5
output file contains only one amino acid
#200
Jiayi-Zheng
opened
1 year ago
1
Problem with seqtk sample
#199
SplitInf
closed
1 year ago
1
seqtk produces different number of reads for paired end files
#198
ruy-jauregui
closed
1 year ago
1
Question: DNA string compressing
#197
jianshu93
closed
1 year ago
1
The output file size of seqtk subseq is zero
#196
CherryX727
closed
1 year ago
1
ERROR: the 2nd file has fewer records
#195
mbk0asis
closed
2 years ago
1
seqtk sample can't properly output fastq.gz
#194
soappp9527
closed
2 years ago
1
seqtk sample not working as expected
#193
antoine4ucsd
closed
1 year ago
2
support >2G sequences
#192
c-zhou
closed
1 year ago
1
`seqtk seq` segfaults on 10G scaffolds
#191
mcshane
closed
1 year ago
4
seqtk sample: with out without replacement?
#190
erajshafiq
closed
2 years ago
1
subseq empty output
#189
SingleCellCRM-user
opened
2 years ago
0
feature request: ability to pass through all reads by specifying sample '1.0'
#188
eboyden
opened
2 years ago
0
cutN penalty to identify all Ns?
#187
nikostr
opened
2 years ago
0
Fail to open input file/stream
#186
XueWang2019
opened
2 years ago
1
seqtk hrun bin size
#185
kimin0402
opened
2 years ago
1
Seqtk trimfq used on files in .gz format returns much larger files but still .gz
#184
bmillerlab
closed
2 years ago
1
Merging multiple fastq.gz files
#183
baigal628
closed
2 years ago
2
Add LDFLAGS CPPFLAGS and unshadow CFLAGS
#182
mr-c
opened
2 years ago
0
seq comp documentation per #47
#181
lskatz
opened
2 years ago
1
seqtk subseq in.fq name.lst > out.fq didn't work
#180
li0604
closed
2 years ago
4
make warning
#179
chenling-immunai
closed
2 years ago
4
Seqkit
#178
Agat007-34
closed
2 years ago
1
error running seqtk with parallel
#177
EduanWilkinson
opened
3 years ago
1
Error: Unable to locate package seqtk
#176
HanaBanan
opened
3 years ago
1
Packaging
#175
V-Z
opened
3 years ago
0
Extract sequences in regions doesn't work?
#174
deb0612
opened
3 years ago
0
output as compressed?
#173
ahdee
closed
3 years ago
2
Hi
#172
kaurravneet4123
opened
3 years ago
2
Problems with seqtk rename on fastq files with long reads (like isoseq)
#171
maol-corteva
opened
3 years ago
1
Not sorting /1 and /2 reads properly.
#170
jallmer
closed
3 years ago
1
Subseq extracting reads with query name list failed
#169
yangyxt
opened
3 years ago
1
Add prefixsplit function
#168
Tixii
opened
3 years ago
0
fastq record in wrong order
#167
sunfenghao2017
closed
3 years ago
1
Problems during installation
#166
naurasd
closed
3 years ago
2
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