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I would like to use TFBScan (default) to scan the whole genome and do a general comparison with BINDetect results to show how much BINDetect filters out motifs. I see some motifs detected in a specifi…
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https://mp.weixin.qq.com/s/DI8fxtKSuZ_LemxhFznSDg
ixxmu updated
2 years ago
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[Splicing mechanism](https://www.youtube.com/watch?v=vMMt0jA8dcM)
Intron
- starting point: 5' (5 prime) splice site: splice donor, GT***
- ending point: 3' (3 prime) splice site: splice acceptor, *…
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Hi, fl
I am creating a new issue here, I was able to bypass the bowtie2 index problem by changing the "hg" to "genome". Unfortunately, still having a little problem with the rest of the code. Pleas…
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Dear developers,
I have encountered a problem like this
```
6094213 reads counted
6254587 reads counted
6414961 reads counted
6575335 reads counted
6735709 reads counted
6896083 r…
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https://mp.weixin.qq.com/s/yhsuUgZvskA_wqD5D3194g
ixxmu updated
2 years ago
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Our lab is completely new to analysing our own modified sequencing data. We have been trying to use megalodon to analyse our sequencing data on and of for some time now with no real success. I am hopi…
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https://mp.weixin.qq.com/s/lY6tmoKuNzPtICrWjOkE6A
ixxmu updated
2 years ago
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Hello Marcus!
Megalodon has been working splendidly, so this is more so a question.
With our bedmethyl output files, we are trying to do some validation on the results, so we have an idea of th…
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When running gimme maelstrom using a 'nonredundant.motifs.pfm' file generated by a different maelstrom run (on different yet similar data), the mapping rate of motifs to TF drastically drops.
Imag…