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Currently, libraries are hardcoded to install into `lib64`
https://github.com/ncbi/sra-tools/blob/02ddc5743da8b13c75e86f5c3b01248ab119f036/build/env.cmake#L365
In Homebrew (https://github.com/Ho…
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Use protocol (https://docs.google.com/document/d/1o0L-YIHEppWbu53qVP1yhm9neq2KQnr7/edit) to search for H5N1 and H7N9 reference sequence.
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https://mp.weixin.qq.com/s/Fr_No_AN1O6qsFo8QcmR0Q
ixxmu updated
9 months ago
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I followed ncbi steps to install sra kit and run the fastq files to analyze. But even after a smooth configuration I am unable to run the fastq-dump successfully, with an error :
fastq-dump.3.0.2. e…
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## Issue Description
Eight instances of abusive and connected clients have been identified involving the following activities:
- Almost fully self-dealing their own applications
- Utilising VPNs …
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The read names generated by Illumina machines are structured and provide useful information about the generation of the read on the flowcell. This information is critical for detecting optical duplic…
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**Describe the bug**
Some SRA files are incorrect (either due to submitter not supplying correct files, or SRA not having correct annotation). For example, this file:
[SRR18972600](https://trace.n…
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The [ENA API changed yesterday](https://docs.google.com/document/d/1RPHmK8Pvm9UxSa21Ej3MkGoGYO9baSxwxk_dOuWWyNE/edit?usp=sharing) and the following fields are no longer valid: `cram_index_ftp,cram_ind…
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Hi!
I was granted an access to phs001680.v1.p1 data from dbGap - original paper here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6641984/. I downloaded all the scRNAseq (Smart-seq2) files with…
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Searched: PRJEB52272 (see: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB52272)
Returned: [ERR9976022](https://www.ncbi.nlm.nih.gov/sra/?term=ERR9976022)
The issue is that these accessions are not …