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The Slack discussion related to this is at https://nmdc-group.slack.com/archives/C060MQ7BA9K/p1711036266225529
The current consensus would be to use the enclosed "NMDC microbe" background for:
- F…
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When in doubt, I'd like to delete these tests
Database-analytical_sample-extract-exhaustive.yaml
- instantiates a [ProcessedSample](https://microbiomedata.github.io/nmdc-schema/ProcessedSample/)
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Test Runs on Napa instance and pre-requisites for Metagenomic workflows.
**Note:**
Context for this test run assumes the the following updates have been applied to the testDB instance:
- Updates to st…
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Placeholder for updating to a tagged release version of nmdc-ontology. Changes in main in nmdc-ontology recently broke data portal ingest (b/c of Cyclic graph) so this is a good time to update it.
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aclum updated
3 months ago
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NEON use case / example: id:6f99e199-c6c3-4d79-aac6-57446fde26f4
3 soil samples are collected, then pooled into 1 for the DNA extraction. This pooling means the 3 individual samples are NOT sent fo…
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See also #23
Are there plans for a mapping to GCMD?
https://gcmdservices.gsfc.nasa.gov/kms/concepts/concept_scheme/sciencekeywords
cc @alisonboyer
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- [x] remove comments about `type`
- [x] remove `type` `slot_usages`
- [x] https://github.com/microbiomedata/nmdc-schema/issues/1574
- [x] https://github.com/microbiomedata/nmdc-schema/issues/1553
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The task here is to implement the following (copy/pasted from [Slack](https://nmdc-group.slack.com/archives/C05NVJPNZ1T/p1717716950857039)):
> I've had an idea floating around in my head for the pa…
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the nmdc-schema has a [external_identifier](https://github.com/microbiomedata/nmdc-schema/blob/4642786d8bbb2589efcdfdc5cd440a7baa41e2ca/src/schema/external_identifiers.yaml#L24-L33) type, but it is ca…
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nmdc:psp is invalid, expecting nmdc:bsmprc
bsmprc is going away, biosample was too specific. Need to update the ID prefix to matprc or something