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We have this term:
id: GO:0003833
name: beta-alanyl-dopamine synthase activity
namespace: molecular_function
def: "Catalysis of the synthesis of beta-alanyl-dopamine from the precursor dopamine (3…
sjm41 updated
2 years ago
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Is there a way to implement checking for paralogs vs orthologs? Maybe a check to examine multiple copies of an assembled sequence during read alignment.
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I ran eggnog-mapper on the web and the out.emapper.orthologs file had a line which was labeled one2many, but seemed to only map to one gene.
NC_036025.1:1089523-1090612(-)_1 one2many Saccharomyces…
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[ss_liana.zip](https://github.com/saezlab/liana/files/7235933/ss_liana.zip)
I cant make liana work my Seurat Dataset. I have attached one downsampled example as attached. The error when working wit…
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I decided to go ahead and add the cerevisiae orthologs from Compara. It's easy to edit or remove them later.
Here is the file: https://github.com/japonicusdb/japonicus-curation/blob/main/cerevisi…
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following from:
https://github.com/japonicusdb/japonicus-config/issues/32#issuecomment-879018983
add to japonicus manual orthologs file.
Then GO annotation will come automatically.
ACTION: ORT…
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Ubuntu 20.04 (WSL)
Hi, I've installed BiG-SCAPE and CORASON successfully.
When running BiG-SCAPE it appears to be no problem as I can visualize with no troubles the index.html file.
However, …
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Hi,
Apologies if this has been documented/answered elsewhere.
I'm hoping to obtain a list of gene orthologs between the sea urchin (_Strongylocentrotus purpuratus_) and zebrafish (_Danio rerio_…
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something funny (peculiar)here:
https://www.pombase.org/gene/SPAC29A4.05
http://japonicusdb.kmr.nz/gene/SJAG_04781
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Hi, I am analysing the completion values of pathways from a prospective microbial eukaryotic genome. I have used two strategies two check the competition of pathways; 1) KEGG Mapper Reconstruction Res…