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## Language integrations (Done)
- Pathways: BioPAX
- Systems biology
- SBML/BioModels
- CellML/Physiome Model Repository
- Synthetic biology: SBOL
- https://synbiohub.org/public/bsu/BO_…
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This SEP proposes a systematic set of "stem-top" glyphs representing small sites affecting DNA, RNA, or protein. The glyphs in this system are Biopolymer Location, Stability Element, and Cleavage Sit…
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Molecular Species glyphs are currently defined in terms of BioPAX terms, which is limiting and does not match with SBO used for Interactions and Interaction Nodes. This SEP proposes changing to SBO, k…
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# SEP V005: Ambiguities and Variants
| SEP | |
| --- | --- |
| **Authors** | Jacob Beal (jakebeal@ieee.org) |
| **Editor** | |
| **Type** | Specification |
| **SBOL Visual Version** | 1.1 |
…
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# SEP V004: New Glyph Collection
| SEP | |
| --- | --- |
| **Authors** | Jacob Beal (jakebeal@ieee.org) |
| **Editor** | |
| **Type** | Specification |
| **SBOL Visual Version** | 1.1 |
| *…
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Importing either of the attached files (inline_or_rcomplement_explicit.xml or inline_or_rcomplement_implicit.xml) should produce the design space pictured in inline_or_rcomplement.png.
[inline_or_rco…
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I am browsing over the Bacillus subtilis Collection and for parts that are classified as type Module, there are no SBOL visual glyphs shown.
[Here](https://synbiohub.org/public/bsu/SyBiOntKB2sbol/…
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This possibly relates to #31. Can visbol-js draw SBOL glyphs like gene markers, but to-scale, with the right lengths, positions and spacing? The SBOL language doesn't really seem to concern itself wit…
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When a VISBOL rendering is omitted for being too large, it should be reported on the page, since otherwise the person would expect it to be there.
Similar warning messages might also want to be don…
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GenBank exports come out with anonymous features. Here is an example:
https://synbiohub.org/public/igem/BBa_K808000/1
https://synbiohub.org/public/igem/BBa_K808000/1/BBa_K808000.gb
The SBOL know…