-
I'm attempting to run the pipeline (on an HPC cluster) and the `windowmasker` step is throwing the following error message:
```
Creating specified working directory /gscratch/scrubbed/samwhite/out…
kubu4 updated
3 years ago
-
while reading in fragments information with command line:
fragment.path
-
I tried the tutorial named pySCENIC protocol: PBMC10k using the dataset from 10X Genomics.
However, I got the error as followed. I checked the adj.csv, there seemed nothing wrong with it. Can anyone …
-
# nf-core/rnaseq bug report
Hi,
thanks for the great project.
## Check Documentation
I have checked the following places for the error:
- [x] [nf-core website: troubleshooting](https://…
-
I used the following command to create a Snakefile following the instructions at https://github.com/liulab-dfci/MAESTRO/blob/master/example/RNA_infrastructure_10x/RNA_infrastructure_10x.md.
Unfortu…
-
Hi Team Seurat,
I'm working on a set of clinical samples, where sample quality varies a lot among samples, and some of the samples contain different cell types. As a result, a lot of critical genes…
-
Dear developers,
MultiMap looks great in the pre-print! I’m trying to apply it to a CITEseq dataset and got an error.
I’ve pulled the current code again (today at 11.30 am UK time) and now tried…
-
Hi all,
here's information about the deconvolution methods we would like to integrate:
- [x] [Bisque](https://github.com/cozygene/bisque)
- [x] [CIBERSORTx](https://cibersortx.stanford.edu/)
-…
-
Hi,
Thanks a lot for the useful tool. When I tried to run "Viral_Track_scanning.R" with COVID-19 data from your paper (GEO Datasets: GSM4339774), it reported the following error right after read al…
-
Looked for examples for creating the input object from the 10x Cell Ranger output file and loaded the `contig_list` example data and used that to compare my input data list/nested data.frame formats. …