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Hi Alex & community,
thank you for your great work
When I run the `training_ESM1b_taskspecific.py` script, how should I modify the code to run it properly? The datasets, named 'train_data_ESM_trai…
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`multidms==3.0` introduces a much easier interface for fitting collections of models in parallel. @Caleb-Carr and I have put together this issue to serve as an outline/plan for updating the notebooks …
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**Background**
Sometimes users need to register oligonucleotides containing randomized or "mixed" bases. It means that on the defined position a variant monomer could occur.
Variant monomer is a mon…
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We've been on a chirality and cis-peptide mistake hunting recently, after we discovered that `Ensembler` was causing these in some simulations. I also just looked through some of my manually set up si…
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Hi, I'm trying to use DeepRank-Mut. The first problem is that I don't get how to run the tests, because in the documentation it is stated to enter in the test directory and run pytest, but this comman…
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* **InterPro ID / label**
GO:0009097 | isoleucine biosynthetic process | IEA with IPR012080
* **Example sequences with problematic annotation (ID + gene/protein name):**
* **Description of …
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Please provide as much information as you can:
* **Suggested term label:**
NTR: L-valine biosynthetic process
* **Definition (free text)**
standard def
* **Gene product name and ID t…
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Dear author,
Thank you for developping this great tool !
Once metannotate installed using one_command_install.sh, I run
python2.7 run_metannotate.py -h
And i had this error message below; do…
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Dear developers,
I would like to generate versions of existing proteins with your tool that are lacking one amino acid in their sequence (using alphabet of 19 amino acids). I was thinking to do it …
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Is it not possible to use mk_prepare_receptor to prepare a pdb file for flexible docking only and not for reactive docking?