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dms-vep
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dms-vep-pipeline-3
Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
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Update `multidms` to allow pandas update.
#145
jgallowa07
closed
1 week ago
1
we need to either update `multidms` immediately to fix serious bug, or stop using it
#144
jbloom
closed
1 week ago
3
make `use_precomputed_barcode_counts` backward compatible
#143
jbloom
closed
2 weeks ago
0
add option to use pre-computed barcode counts
#142
jbloom
closed
3 weeks ago
0
create options to **not** require FASTQ input
#141
jbloom
closed
3 weeks ago
1
Test on pull requests, deploy on pushes to main
#140
WillHannon-MCB
closed
1 month ago
0
Fix issues with `Altair.vue`
#139
WillHannon-MCB
closed
1 month ago
1
make correlation scatter plots in notebooks that avg replicates
#138
jbloom
closed
1 month ago
0
Replicate correlation scatterplots plots
#137
Bernadetadad
closed
1 month ago
1
Fix significant numbers on sliders
#136
bblarsen-sci
closed
1 month ago
1
General improvements to the VitePress documentation
#135
WillHannon-MCB
closed
1 month ago
0
Disable 'dark mode' in VitePress documentation
#134
WillHannon-MCB
closed
1 month ago
0
make and save scatter plot in func effect diffs
#133
jbloom
closed
1 month ago
0
Stochastic duplication of `Altair` plots on VitePress homepage
#132
WillHannon-MCB
closed
1 month ago
3
more instructions for VitePress homepage
#131
jbloom
closed
1 month ago
0
add Google Analytics instructions for VitePress page
#130
jbloom
closed
1 month ago
0
what is relationship between `.vitepress/config.mjs` and `index.md` metadata for VitePress?
#129
jbloom
closed
1 month ago
1
Upgrade GitHub actions to use Node 20.X
#128
WillHannon-MCB
closed
1 month ago
0
VitePress deployment failure
#127
jbloom
closed
1 month ago
3
more customization of summaries config
#126
jbloom
closed
1 month ago
0
fix zooming of line plot in site summary
#125
jbloom
closed
1 month ago
0
zooming in on summary plots no longer zooms on line plots
#124
jbloom
closed
1 month ago
0
remove altair figure legends / titles
#123
jbloom
closed
1 month ago
0
add mutation annotations
#122
jbloom
closed
1 month ago
0
remove titles / legends from interactive figures in place of VitePress configuration
#121
jbloom
closed
1 month ago
2
allow VitePress config to be omitted
#120
jbloom
closed
2 months ago
0
structure annotations on heatmaps
#119
Bernadetadad
closed
2 months ago
2
site phenotype tool
#118
Bernadetadad
opened
2 months ago
10
Jesse edits to VitePress addition
#117
jbloom
closed
2 months ago
0
Add documentation for creating a homepage with `VitePress`
#116
WillHannon-MCB
closed
2 months ago
7
enable multiple summary plots
#115
jbloom
closed
2 months ago
0
lint Jupyter notebooks with `ruff`
#114
jbloom
closed
2 months ago
0
summary.csv filtering
#113
Bernadetadad
closed
2 months ago
2
allow non-alphanumeric characters in summary keys
#112
Bernadetadad
closed
3 months ago
1
lint Jupyter notebooks by fixing `ruff.toml`
#111
jbloom
closed
2 months ago
0
enable generation of multiple distinctly configured summary plots
#110
jbloom
closed
2 months ago
1
add example on per-condition filters for func effect diffs (addresses #108)
#109
jbloom
closed
4 months ago
0
Add an option to filter functional difference heatmaps based on functional scores
#108
Bernadetadad
closed
4 months ago
1
"minimum max" filter bug
#107
Bernadetadad
opened
4 months ago
3
fix `.gitignore` in test example
#106
jbloom
closed
4 months ago
0
Add single nucleotide accessibility to heatmaps
#105
Bernadetadad
closed
1 month ago
0
gitignore wrong file name
#104
Bernadetadad
closed
4 months ago
0
pipeline runs when `antibody_escape_config` is `null`
#103
jbloom
closed
4 months ago
0
Pipeline not running without antibody escape
#102
arjunaditham
closed
4 months ago
8
better error messages when problems with `barcode_runs`
#101
jbloom
closed
5 months ago
0
snakemake issue with the latest environment update
#100
Bernadetadad
closed
5 months ago
2
add `func_effect_diffs` rule
#99
jbloom
closed
5 months ago
0
update environment
#98
jbloom
closed
5 months ago
0
Add functional scores to multidms heatmaps
#97
Bernadetadad
closed
5 months ago
1
filtering low effect mutants in heatmaps for receptor binding and mAb escape
#96
bblarsen-sci
closed
5 months ago
1
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