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dms-vep
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dms-vep-pipeline-3
Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
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update software and improve global epistasis convergence
#162
jbloom
closed
1 day ago
0
pipeline is using old `altair` version
#161
jbloom
opened
1 day ago
0
way to combine measurements from different parts of protein when averaging
#160
jbloom
opened
3 days ago
0
alternative to GitHub to storing large results from pipeline?
#159
jbloom
opened
4 days ago
3
Issue with multiDMS v0.3.3
#158
bblarsen-sci
closed
1 day ago
6
add option to not show heatmaps in summary plots
#157
jbloom
closed
1 week ago
0
Allow JSON in GitHub pages docs
#156
jbloom
closed
3 weeks ago
0
download altair line plots separately
#155
Bernadetadad
closed
1 week ago
3
feature request - improve escape count summary plots (low priority)
#154
bblarsen-sci
opened
1 month ago
4
Update `snakemake`, `altair`, and `upsetplot` versions in `environment.yml`
#153
jbloom
closed
1 month ago
0
151 remove defaults channel
#152
Caleb-Carr
closed
1 month ago
0
defaults in environment yaml
#151
Caleb-Carr
closed
1 month ago
3
update to `polyclonal 6.12`
#150
jbloom
closed
2 months ago
0
Align zoom bar to line plot
#149
Bernadetadad
closed
2 months ago
1
add `duplicate_fastq_R1` option
#148
jbloom
closed
4 months ago
0
Allowing re-use of barcode run files in barcode_runs.csv
#147
arjunaditham
closed
4 months ago
1
Is there a better way to display the polyclonal fitting based on different concentrations?
#146
bblarsen-sci
closed
4 months ago
1
Update `multidms` to allow pandas update.
#145
jgallowa07
closed
5 months ago
1
we need to either update `multidms` immediately to fix serious bug, or stop using it
#144
jbloom
closed
5 months ago
3
make `use_precomputed_barcode_counts` backward compatible
#143
jbloom
closed
5 months ago
0
add option to use pre-computed barcode counts
#142
jbloom
closed
5 months ago
0
create options to **not** require FASTQ input
#141
jbloom
closed
5 months ago
1
Test on pull requests, deploy on pushes to main
#140
WillHannon-MCB
closed
6 months ago
0
Fix issues with `Altair.vue`
#139
WillHannon-MCB
closed
6 months ago
1
make correlation scatter plots in notebooks that avg replicates
#138
jbloom
closed
6 months ago
0
Replicate correlation scatterplots plots
#137
Bernadetadad
closed
6 months ago
1
Fix significant numbers on sliders
#136
bblarsen-sci
closed
6 months ago
1
General improvements to the VitePress documentation
#135
WillHannon-MCB
closed
6 months ago
0
Disable 'dark mode' in VitePress documentation
#134
WillHannon-MCB
closed
6 months ago
0
make and save scatter plot in func effect diffs
#133
jbloom
closed
6 months ago
0
Stochastic duplication of `Altair` plots on VitePress homepage
#132
WillHannon-MCB
closed
6 months ago
3
more instructions for VitePress homepage
#131
jbloom
closed
6 months ago
0
add Google Analytics instructions for VitePress page
#130
jbloom
closed
6 months ago
0
what is relationship between `.vitepress/config.mjs` and `index.md` metadata for VitePress?
#129
jbloom
closed
6 months ago
1
Upgrade GitHub actions to use Node 20.X
#128
WillHannon-MCB
closed
6 months ago
0
VitePress deployment failure
#127
jbloom
closed
6 months ago
3
more customization of summaries config
#126
jbloom
closed
6 months ago
0
fix zooming of line plot in site summary
#125
jbloom
closed
6 months ago
0
zooming in on summary plots no longer zooms on line plots
#124
jbloom
closed
6 months ago
0
remove altair figure legends / titles
#123
jbloom
closed
6 months ago
0
add mutation annotations
#122
jbloom
closed
6 months ago
0
remove titles / legends from interactive figures in place of VitePress configuration
#121
jbloom
closed
6 months ago
2
allow VitePress config to be omitted
#120
jbloom
closed
7 months ago
0
structure annotations on heatmaps
#119
Bernadetadad
closed
7 months ago
2
site phenotype tool
#118
Bernadetadad
opened
7 months ago
10
Jesse edits to VitePress addition
#117
jbloom
closed
7 months ago
0
Add documentation for creating a homepage with `VitePress`
#116
WillHannon-MCB
closed
7 months ago
7
enable multiple summary plots
#115
jbloom
closed
7 months ago
0
lint Jupyter notebooks with `ruff`
#114
jbloom
closed
7 months ago
0
summary.csv filtering
#113
Bernadetadad
closed
7 months ago
2
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