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After full installation completes, the app cant launch and I have no idea why? Everything else seems to go right
Successfully installed botocore-1.20.88
./CellProfiler_Install.sh: line 179: cd: …
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Dear all,
I have successfully converted over 300 .vsi files, however one of them is causing issues.
The file can be opened using BioFormats in Fiji, where there are 3 series inside it. A Label…
lacan updated
3 years ago
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_Originally posted by @sbesson in https://github.com/ome/bioformats/issues/3697#issuecomment-847306437_
The OME-XML validation calls used by certain readers and the utilities try to retrieve the up…
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**Component**
diplib 3.0.0 (a.k.a. PyDIP) from https://pypi.org/project/diplib/
**Describe the bug**
After successfully following installation instructions the following message is returned after…
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Issue is a follow up to image.sc thread https://forum.image.sc/t/bio-formats-returns-all-metadata-except-ome-meta-data/52295/2
Using the sample file provided in the thread and correcting validation…
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Tasks left to do before we release PathML:
- [x] Deep-Blur dataset (Ryan)
- [x] Finalize h5path format and interaction (Ryan)
- [x] DICOM backend (David)
- [x] Bioformats backend (Ryan)
- [x] D…
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When reading in an `ome.tif` file of type `unsigned short` the `BioformatsLoader.jl` messes up the singed bit.
You can try this dataset:
https://mirror.imagej.net/images/m51.tif
which reads in fine…
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Hi BioFormats developers and community members,
When I use BioFormat 5.8.2 in ImageJ (FIJI) 1.52c or MATLAB, the timestamp for each frame of ND2 files recorded by fast timelapse mode in NIS-Elemen…
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## 🐛 Bug
When attempting to load a plugin I get the following error:
2021-07-02 16:46:43.047 napari[70356:7689775] error: unrecognized arguments: --upgrade
This applies to all attempted plugins inc…
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I am trying to run a preprocessing pipeline on a dataset of 70 CODEX images each with the shape of 1920, 1440, 1, 4, 23 using the following code:
`dataset.run(pipe, distributed = True, client = cl…