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Hi There,
I get the following error when running MetaPhage even though the kraken2 and krona output files (*_output and *_report as well as *_krak_krona_abundancies.html) are created and the direct…
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https://mp.weixin.qq.com/s/YiFreK3B5lQ5L8Y_aMOzlA
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Right now, Bigquery files get made as side effects during the data extraction process, and as one of the files made when writing limma tables. Make a new function that does both of these?
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### Describe the bug
When the run starts (catboost + optuna), after the first round of optimization, the below error is shown. No further sync happens after this error.
This error also occurs wh…
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Hi again! Sorry for all my issue requests, but I am learning bioinformatics as a hobby with RNAseq, therefore, my knowledge on code is very limited!!
So I wanted to run the pipeline on my own time …
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I'm working on the specialized models section and here are some proposed changes. Please weigh in.
1. should we order this section alphabetically?
2. for the pedigree models (in which there is con…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
```…
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- [x] 1. ONGOING- Tickets on GOC side to improve import process
- [ ] - Replace transports_or_maintains_localization_of relations with has_primary_input #200. I believe we also st…
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I came across a messy little branch in the UShER tree's BA.1 branch with lots of longish internal branches and substitutions occurring in stretches of more or less adjacent bases in the ranges 27200-2…
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [x] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…