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Hi, The manual says that bamRemoveDuplicatesType only applies to:
"string: mark duplicates in the BAM file, for now only works with (i) sorted
BAM fed with inputBAMfile, and (ii) for paired-end alig…
gevro updated
2 years ago
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Hello,
My colleagues and I are trying to adapt your ICIM script for our own differential expression project with olfactory epithelium, however, we've been running into quite a few errors and would…
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Hi! Thanks for providing a python-based version of CARLIN pipeline. We want to modify the arguments to run on our own sequencing data and reference from a different experiment protocol. However, I can…
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Hi,
Thank you for creating this software! It's mentioned in the manuscript for CellBender (and elsewhere on this github page) that CellBender can be used for non-scRNAseq data, though I believe onl…
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Hi, Thank you very much for this amzing work, I was trying to use your pipeline, however seem like the transform_bc.py file is mising from the repository. Could you please let me know how can i get th…
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If only I understood ethercalc source code and know how to code in livescript , here are some features I would love to see / implemented
1. Those lock/unlock cell button , when a user clicks the lock…
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Hi,
I retrived the cell data from an anndata, and then use valid_bc=cell_data['barcode'] to select the cells when generating cistopic_obj, but at the end there are more nuclei (4011) in cistopic_o…
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Hello,
i'm currently dealing with RNA-seq data generated with Lexogen QuantSeq, as ana laternative method to microarrays (https://www.lexogen.com/quantseq-3mrna-sequencing/). Briefly, it's a kit to g…
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Continued from https://github.com/HumanCellAtlas/hca-data-wrangling/issues/232
**Primary Wrangler:**
Ami
**Secondary Wrangler:**
Enrique
**Associated Markdown**
Found [here](https://github.c…
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## Basic information
```
❯ pip show cellphonedb
Name: cellphonedb
Version: 5.0.1
Summary: Inferring cell-cell communication.
Home-page: https://github.com/ventolab/cellphonedb
Author: The Cel…