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I'm making a separate directory for each top-level topic in the course outline. At the moment I plan for `wright-fisher`, `coalescent` and `flu` for day 2.
trvrb updated
9 years ago
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```
What steps will reproduce the problem?
1. Initialize a tree with UPGMA
2. Calculate initial density of the coalescent
This bug was introduced in revision 811 in Coalescent.java lines 101-106. I …
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```
What steps will reproduce the problem?
1. Initialize a tree with UPGMA
2. Calculate initial density of the coalescent
This bug was introduced in revision 811 in Coalescent.java lines 101-106. I …
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```
If you are receiving IM messages with grip, from popular apps like IM+ or
Beejive, you get ALOT of grip boxes, one everytime your friend presses send.
Could it be possible in this situation to …
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```
What steps will reproduce the problem?
1. In beauti, specify Tree Prior: Speciation Yule Process,
2. Specify an Initial Value for prior treeModel.rootHeight in BEAUTI
3. generate xml file, and run…
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Originally reported on Google Code with ID 762
```
What steps will reproduce the problem?
1. svn up && ant (aka, compile from trunk)
2. go through BEAUti and select the skygrid coalescent prior
3. I…
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From Sean: In skeleSim.classes.R, the slot simulator, maybe we should change this from "c" and "f" to "fsc" and "rms" to match the two simulators we are using? This would make the program more open en…
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Export the node support values generated from Bayesian runs into a tree into the [extended newick](http://dmi.uib.es/~gcardona/BioInfo/enewick.html) format:
`[label]#[type]tag[:branch_length]`
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```
What steps will reproduce the problem?
1. In beauti, specify Tree Prior: Speciation Yule Process,
2. Specify an Initial Value for prior treeModel.rootHeight in BEAUTI
3. generate xml file, and run…
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```
Tree prior cannot be changed. After tree prior is changed to any one, when you
switch the tab, e.g. prior panel, the tree prior will revert to Coalescent
Constant always.
The bug may be in se…