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The Align Sequences button in the Sequence Data Tool cuts bp off of the end of some sequences in the alignment, and shifts reading frame by inserting gaps:
This does not happen with every dataset I…
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Issue reported by email from [Scott Brown](http://www.holtlab.ca/personnel.html#scottb):
>I have a question regarding the protein sequence output from Isovar. I have seen multiple cases where th…
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- [x] Karoly
- [x] Upendra
- [x] Lingyun
After a discussion with Pedro the suitable anndata experiment for our local environment is with the accession: `E-ANND-3`.
It can be found here: `/nfs/product…
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I've been going over [ModelUsage.ipynb](https://github.com/gagneurlab/SpeciesLM/blob/main/ModelUsage.ipynb). I’ve been trying to check if the five prime sequences match the sequences I am looki…
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Something along these lines will give you what you want...
```{R}
my_func
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Yes, I'm interested on this project and seen lots of suggest to build on WSL2 or just Linux. But I keep tried various ways(#69) and have some record there.
I prepared 2 ways to build:
First one:…
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## Expected Behavior
`metaeuk` run normally with other genomes, but crash with a large pine genome (Pinus tabuliformis, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA784915). Do it not support the ver…
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Conceptually similar in some ways to what happens in pVACvector. In working with peptide manufacturers, there is sometimes a case where the manufacturer wishes to add a few (e.g. 1-3) amino acids to…
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### Project title: Comparative analysis of camel mitochondrial genomes ###
#### The aims of this project are to: ####
- annotate the mitochondrial genome of Arabian camel
- the mitochondr…
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