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I persist in my effort to do "actual science" on pangeo.pydata.org.
I now have several large (~12TB) datasets in cloud storage in zarr format. The problem I am facing is intermittent errors when de…
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Dear @bioconda/all,
to create the author list of the Bioconda paper, we need your full name and affiliation (include address). I hope to be able to include everybody who is part of the github team, p…
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For development we want to be able to run a small dataset with plink. We'll try to add the data that comes with gemma, so we use the same test set.
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This icon would represent DNA or other genomic data; it would be usable by medical and research apps and bio-hack games in which you can modify your character's DNA or gene expression patterns.
Thi…
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The numbers seem to be off by several orders of magnitude (6?)
```
select avg(Mb) from Geno where SpeciesId = 5;
+------------------+
| avg(Mb) |
+------------------+
| 51160355.7522124 |
+…
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PURLs for old versions of HPO are invalid. This creates a problem if systems want to use PURLs to direct machines to the version of HPO they are using.
I appreciate that there is some effort involv…
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@jgoecks @mayfielg @ahwagner : See my notes below. I simply wanted to capture them here and if it's appropriate, move them over to google docs.
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# G2P - Knowledgebase integration
## Abs…
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Hello, I've sequenced one bacteria genome using HiSeq platform (2x150bp). Sequencing depths are good (almost 330-fold). I typed the commands like in the below, but some error reported and spades is no…
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_From @cmungall on March 9, 2015 1:7_
Consider the _phenotype_ parathyroidism and its occurrence in various diseases:
http://www.monarchinitiative.org/phenotype/HP:0000843
(click 'disease' tab)
Thes…
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UAM mammals currently use:
5= in LN2 1 hr after death
4= frozen 24 hrs after death
3 = frozen and thawed
2 = somewhat rotten
1 = very rotten
0 = unknown/unchecked