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I plotted LAML dataset of TCGA from MC3 for TiTv ratio plot (ratio = ~1). I found it is very different from the TiTv plot in the maftools vignette (ratio = ~3). do you know what is causing the differe…
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After testing with the latest release (1.10) we've encountered an error when using bcftools view and filter:
`chr1 17000202 . A C . clustered_events;haplotype;normal_artifact;strand_bias CONTQ=64;D…
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Hi,
I have a question regarding bcftools norm ( bcftools norm Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multial…
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I am using Deepvariant (v.0.7.2) for germline calling and now I have a trio, for which I need to identify de novo variants.
I am bit concerned, as based on this pre-print, it seems like Deepvarian…
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Hello! Thanks for the great multiqc tool!
**Description of bug:**
Peddy module of multiqc breaks when running with bcbio
**MultiQC Error log:**
```
[INFO ] multiqc : This is MultiQC…
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Hi, I am running PureCN on cell line whole exome sequencing data with a pool of process matched normals. I am running into some issues with the .vcf files.
SKLMS1.VCF
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Re: #247 and other things not yet discussed at length.
Finalize post-processing and annotation of germline calls. Something like this:
, and I am trying to filter it by gnomAD AF. However, at a certain position, it uses up all available memory…
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thanks for this powerful tool.
I have two questions,
if I intall from git clone, and do the perl install.pl to install an old version before.
and now I want to install from conda of a new versio…