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### Issue type
Bug
### TomoBEAR source
source code (via interactive MATLAB session)
### TomoBEAR version
v0.4.0
### Computing system
HPC cluster (interactive computing node)
### Issue descript…
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After our discussion on Monday, I was thinking more about the concept of node granularity and I actually couldn't come up with a 'natural' way to define something I'd call an 'atomic node'. An atomic …
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Hi, not sure if this is an issue with scDblFinder, BiocParallel, or me, but this worked in the past but isn't working any more for some reason.
``` r
library(Seurat)
#> Attaching SeuratObject
l…
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**Submitting author:** @akashdhruv (Akash Dhruv)
**Repository:** https://github.com/akashdhruv/BoxKit
**Branch with paper.md** (empty if default branch): development
**Version:** 2023.12
**Editor:** @…
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### Describe the bug
When I ssh into my work computer (where aiida is installed) from another computer (at home), the calculations submitted to a *remote* HPC fail, but local calculatio…
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Hi,
Thanks for this wrapper, it's been very useful for me.
I'm having a slight issue with jobs that fail. When a job fails, and I try to re-run the whole workflow, snakemake re-submits the job b…
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## Current behavior
Executors packaged with Prefect are currently limited to `LocalExecutor` (for testing) and `DaskExecutor`.
Wrapping a new Executor is especially difficult/buggy because `Flow…
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### Description of the bug
We want to run proteinfold on our cluster, where we already have the AlphaFold data. However, using passing the `--alphafold2_db` flag to point to this data, proteinfold tr…
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Hey @pkzli,
How can we select a specific GPU, or a type of GPU? I see that some are more powerful than others:
https://doc.eresearch.unige.ch/hpc/hpc_clusters
To get better results, it is bet…
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