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Hi Sean, @seandavi
I can't really put my finger on it but recently the size parameter in the request is not working.
For reprexample,
``` r
suppressPackageStartupMessages({
library(Genomic…
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When we execute GLIMPSE2_phase, each chunk reports the same error: 0mStates for individual 0 are zero. Error during selection. The three steps of step2_script_reference_panel.sh, step3_script_chunk.sh…
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Hi!
I was working with old genomic data produced by Illumina Mate pair sequencing.
This strategy cuts linear intrachromosomal regions in 3kb, 5kb, 8kb, or 20kb segments, ligate, circularizes the f…
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### Data Owner Name
Human PanGenomics Project
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
### Social M…
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Hi,
samtools 1.14 mpileup excludes 'duplicate' reads, but this is not documented in the official documentation.
In my opinion, this should not be the correct behavior. The correct behavior should …
gevro updated
10 months ago
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Hello, a very meaningful tool. I have two questions to ask:
1. Can I use Fastp software instead of SuperDeduper and trim galore to process raw sequencing data to obtain clean data for subsequent anal…
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Hi Haris! I'd like to use PEMA on some metabarcoding data for my graduate work. I successfully installed the Singularity image on my university's HPC environment, but I was hoping for some advice abou…
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Submitting Author: Moritz E. Beber (@Midnighter)
All current maintainers: (@Midnighter, @sofstam, @jfy133)
Package Name: taxpasta
One-Line Description of Package: TAXonomic Profile Aggregation and …
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I am running ampliseq version 2.4.1 to analyze Illumina single end reads from 16s rRNA sequencing data.
I have a total of 794 samples. The sever i am running the analysis has a memory of 125 GB .
…
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Hi Robert & long-time bactopia users!
I've been struggling to translate the following (working) Dragonflye assembly parameters to Bactopia/assembler image thereof:
```
#Set input/output folder …