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In case of multiple json objects being present within location, should the order in which these objects are present be used to generate domain sequence? Or should these objects be arranged in ascendin…
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We want to set up a galaxy workflow that will let undergrads add our blast/interpro annotations to data allowing it to be loaded.
Someone needs to convert the command line workflow to galaxy.
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Hi,
I downloaded InterProScan from here (https://github.com/ebi-pf-team/interproscan/wiki/HowToDownload) and downloaded the PANTHER dataset as well (Step 2). I then used InterProScan to annotate se…
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Discovered a weird problem today:
By default, the SignalP perl script that one downloads from http://www.cbs.dtu.dk/services/SignalP/ has max sequences set to 10,000:
```
# max number of sequence…
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Hello, I am new to interproscan and want to perform PANTHER analysis. At first, I got the error message that PANTHER didn't exist or deactivated. I then edited the properties file and PANTHER seemed t…
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Hi Jon,
Thanks for funannotate and for your continuing support!
I was running version 1.1.1 to annotate a fungal genome. It went well with beautiful results, but I got one warning which I would…
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When running funannotate iprscan on a genome that successfully made it through the predict step (~8000 genes), the result is a nearly empty xml file.
Command issued:
'nohup nice -19 funannotate ip…
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**Hello, I wanted to perform SUPERFAMILY prediction via interproscan but I got some error messages. It never happened before. Can you tell me what should I do? Many thanks.** (I also attached some of …
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### Feature description
@mestato has requested that we convert them to mRNA. I'm in agreement.
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When running KEGG-to-anvio on combined KEGG and InterProScan annotations, the resulting output file has some rows where the e-value is "-". The script anvi-import-functions doesn't like this, as it ex…