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Hi,
I have been using bambu lately for novel isoform identification from long-read RNA-seq data these days. And it is efficient and useful.
However, an issue happened when performing novel isoform…
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Hi
I am having problems getting Panache to run.
I installed Docker and Docker compose and then ran bash ./start.sh
I get the following error:
```
## Populating apt-get cache...
+ apt-get…
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### Prefix
pr
### Explanation
The given regex in Bioregistry is incomplete. In general there are two types of local identifiers in PR:
- purely digital
- UniProtKB identifier (including isoforms)…
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There appears to be little information on PLCz1 that will help us design small molecule inhibitors (no crystal structure, no known inhibitors etc.) therefore we are looking at similar proteins to get …
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- [x] Make mouse model using model copy.
- [x] Fix the first Reactome reaction that does not match Rhea R-HSA-70994 Succinate Fumarate (with FAD redox reaction on enzyme) - this should map up to [RH…
ukemi updated
6 months ago
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Assigning @yaaminiv because we used GO-MWU in class at FHL last summer, but anyone can jump in
Using GO-MWU ([GitHub repo for GO-MWU](https://github.com/z0on/GO_MWU)) to get gene enrichment for cr…
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When running DIANN there are only 1327 genes/proteins found in the FASTA file, but there are 6054 entries when I open the file or load it into Proteome discoverer or Fragpipe. Can you please explain w…
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Hello,
I simulated 50,000,000 PE reads following the wiki. In the target.forSimulation.RSEM.isoforms.results, the sum of the fusion transcripts expression (500 fusion transcripts were simulated) is…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat 8.8
### Workflow Version
23.10.1
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No…
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### Ask away!
1) In the final count matrix files *gene_expression.counts.tsv and *.expression.counts.tsv, only the known genes/isoforms were shown in the table. I wonder if the output can contain the…