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Any idea what this error coud be due?
Id does just been I cannot write enough files
```
export TMPDIR=/local_scratch/silaskieser &> logs/semibin/predict_taxonomy/DNA8-2.log ;SemiBin predict_tax…
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I noticed a small bug in the `prep_mmseqs_dbs.sh`. This script fails due to the lack of the `mmseqs_dbs` directory. I made a branch to try to make a pull request but I got an error saying permission w…
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I am still trying to get MMseqs2 fo fully work in web assembly. For this I would need `execve` to work. In MMseqs2 we use bash basically as a scripting language/workflow engine.
Essentially we have…
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Dear all,
I am trying to use OrthoFinder along with mmseqs.
I created a conda environment, installed numpy and scipy and the downloaded the OrthoFinder_source.tar.gz file.
I run the example …
drelo updated
2 years ago
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Hi,
If I only want to look for hits with a minimum query cover of 80%, should I add `--cov-mode 2 -c 0.8` to the `mmseqs search` command?
I'm new to MMseqs2, and I'm looking for the equivalent o…
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## Expected Behavior
I am using MetaEuk (version 4.a0f584d) to do taxtocontig. The referenceDB was generated from uniref90.fasta.gz with mmseqs. The flow works fine with metaeuk easy-predict and gene…
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Hi Shaojun, I just ran this, and got an error...
SemiBin single_easy_bin -i *fa.gz -b *.bam -o output
SemiBin single_easy_bin -i *fa.gz -b *.bam -o output …
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Hallo,
I want to calculate AAI values and use as input just the directory with the profile DBs (db/) as shown in the tutorial
```
java -jar ~/bin/EzAAI.jar calculate -i db/ -j db/ -o aai_out/test…
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**Describe the bug**
When following the README.md Singularity install steps, `singularity run` results in an error:
```
$ singularity --version
singularity-ce version 3.9.6+ds1
$ singularity …
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in openfold/scripts/prep_mmseqs_dbs.sh
I guess it should be `mmseqs tsv2exprofiledb` not `mmseqs tar2exprofiledb`
Also a bug at line 26: `tar --extract --verbose --file="${DOWNLOAD_DIR}/${f}" \`
…