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as per: https://www.wikidata.org/wiki/User_talk:ProteinBoxBot#Stop_specific_UniProt_statement_imports
and https://www.wikidata.org/wiki/Wikidata_talk:WikiProject_Molecular_biology#Problems_with_PDB…
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Zhang et al. 2021 (https://doi.org/10.1038/s41427-021-00320-0):
This paper has reviewed several simulations to study the interaction of nanoparticles (NPs) and membrane. This paper said there are se…
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If one emits, e.g., the cc-pVDZ basis set for oxygen for NWChem or PSI4, enabling or disabling the "Optimize General Contractions" option will cause 8 or 9 non-zero primitives to be produced for the f…
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- global mapping of small RNA interactome: http://www.cell.com/molecular-cell/pdf/S1097-2765(16)30413-0.pdf
-ncRNA-mRNA interaction: shuffled controls consistently more stable than real interactions.…
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Thank you very much for sharing your great work.
I have a question regarding MAP4 as bit vector.
When we have MAP4 as bit vector, is it possible to identify every bit is corresponding to which …
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I'm trying to calculate the lattice energy of a molecular crystal, here using benzene as an example. The code below calculates one energy for the whole unit cell and another for a monomer in a much l…
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As an addition to [RO:0002447 (phosphorylates)](http://purl.obolibrary.org/obo/RO_0002447) and [RO:0002480 (ubiquitinates)](http://purl.obolibrary.org/obo/RO_0002480), that occur under [RO:0002436 (mo…
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Annotation of peaks with molecular formula or substructure. Analogous to b/y for peptides.
Several sources of annotation:
1. Peak annotation provided as part of USI
2. Structure provided as pa…
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I'm planning on packaging vmd for Arch Linux. But "vmd" is already taken as a package name in the Arch User Repository (AUR) by a program that does "Visual Molecular Dynamics".
Is there a preferred a…