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Package [IntLIM](https://CRAN.R-project.org/package=IntLIM) is currently listed in CRAN Task View [Omics](https://CRAN.R-project.org/view=Omics) but the package has actually been archived for more tha…
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https://mp.weixin.qq.com/s/FmEBkLyTKuk-vNLQ8gKlOg
ixxmu updated
2 months ago
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Hi again Andrey,
I'm excited to try IsoQuant on some of my long-read data - now preprinted (with Stringtie) here: https://www.medrxiv.org/content/10.1101/2023.12.01.23299073v1
For reference, I …
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tl;dr:
Observation windows are a crucial piece of spatial metadata.
It should be possible to associate `SpatialData` objects and elements with observation windows.
Polygon elements can describe ob…
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I'm comparing our schema to mzML, we have
```yaml
metabolomics analysis activity:
is_a: workflow execution activity
in_subset:
- workflow subset
slot_usage:
used:
…
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https://mp.weixin.qq.com/s/1RtQIbBrrl19iP5vpQYQLA
ixxmu updated
2 months ago
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Hello,
I'm trying to use the datasets from tables in your paper. I removed the first line with the table title as required.
I'm uploading Table S2 (microbiomics, ASV 16S):
1. Data type: omics…
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OmicsDI harvests all the records from GEO, but with less metadata. Combine relevant metadata and de-duplicate the records. See also #40
### Related WBS task
https://github.com/NIAID-Data-Ecosystem…
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### Description of the bug
When running the nf-core i get to this step NFCORE_RNASEQ:RNASEQ:FASTQ_ALIGN_HISAT2:HISAT2_ALIGN process within the workflow, a critical error is encountered. The error occ…
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Package [IntLIM](https://CRAN.R-project.org/package=IntLIM) is currently listed in CRAN Task View [Omics](https://CRAN.R-project.org/view=Omics) but the package has actually been archived for more tha…