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A couple of users complained that their private genome don't appear in the protein family sorter.
The reason was that in PFS default is PLfam, and it is not computed for the private genomes, yet.
T…
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Hello,
It happens rather frequently that PAINT annotation matrices do not load at all, or load partially. An example is PTHR11442, that I tried loading today (2016/06/17) several times. Until 9 AM C…
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Hi,
PTHR23431 - FAMILY NOT NAMED (76 sequences) is listed in the PAINT family nodes statistics spreadsheet with the note "GAF file only".
This family used to be part of PTHR23413, which was 60S RIBO…
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re
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Hi Val
Just in case you haven’t seen the news, we have finally released Pfam 28.0 on the old website.
I expect you may find that many of your proteins are no longer in their families, so plea…
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I think this is probably an issue in GO but PKA, PKC, and MAPK are all listed as synonyms on GO:0004674 "protein serine/threonine kinase activity" which is incorrect and their actual protein entities …
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A student just used this term in a practical:
SMC family protein binding
not a useful term, if you know something is binding to an SMC family protein, you should be able to specify the actual bound …
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If the filter doesn't control the heatmap, then it shouldn't be visible on that page. It used to.
![screen shot 2015-10-08 at 11 22 57 am](https://cloud.githubusercontent.com/assets/11475316/10370941…
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This is how the Target Dictionary add form looks like currently:
![screen shot 2015-10-09 at 12 34 42](https://cloud.githubusercontent.com/assets/837119/10392767/2db9bc66-6e82-11e5-8966-1c5469d2645b.…
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for example,
http://harad.vbi.vt.edu:8983/solr/genome_feature/select?q=patric_id:fig|445986.17.peg.17&wt=json&indent=true
this feature says figfam_id is FIG00434305, but in product, FIG00434306: hyp…
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Hi,
It looks quite odd to me that "axonemal dynein complex" is_a "cytoplasmic dynein complex".
I see that the term "axoneme part" is_a "cytoplasmic part", and perhaps this is part of the reason.
Ho…